Results 1 - 20 of 531 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13977 | 5' | -60.5 | NC_003521.1 | + | 206606 | 1.12 | 0.001447 |
Target: 5'- cGGCGACACGGGCGCCGUCUACGCCGCc -3' miRNA: 3'- -CCGCUGUGCCCGCGGCAGAUGCGGCG- -5' |
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13977 | 5' | -60.5 | NC_003521.1 | + | 122637 | 0.82 | 0.139393 |
Target: 5'- cGGCGGCcccgacuuugccgGCGGGCGUCGUCUGCGgCGg -3' miRNA: 3'- -CCGCUG-------------UGCCCGCGGCAGAUGCgGCg -5' |
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13977 | 5' | -60.5 | NC_003521.1 | + | 122225 | 0.81 | 0.172911 |
Target: 5'- uGCGAgCGCGGGUGCCGgcgaCUgaGCGCCGCc -3' miRNA: 3'- cCGCU-GUGCCCGCGGCa---GA--UGCGGCG- -5' |
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13977 | 5' | -60.5 | NC_003521.1 | + | 166222 | 0.8 | 0.185451 |
Target: 5'- cGGCGGCGaGGcGCGCCGgccgCgggACGCCGCg -3' miRNA: 3'- -CCGCUGUgCC-CGCGGCa---Ga--UGCGGCG- -5' |
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13977 | 5' | -60.5 | NC_003521.1 | + | 79633 | 0.8 | 0.189806 |
Target: 5'- cGCGGCGCcucGGCGUCGUCUGCuGCUGCa -3' miRNA: 3'- cCGCUGUGc--CCGCGGCAGAUG-CGGCG- -5' |
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13977 | 5' | -60.5 | NC_003521.1 | + | 165994 | 0.8 | 0.203414 |
Target: 5'- --aGGCGCGGGaCGCCGUCgcgcucgGCGCCGUc -3' miRNA: 3'- ccgCUGUGCCC-GCGGCAGa------UGCGGCG- -5' |
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13977 | 5' | -60.5 | NC_003521.1 | + | 138709 | 0.79 | 0.222868 |
Target: 5'- gGGCGGCACGGGCGCUGgCUggugguGCGuCCGg -3' miRNA: 3'- -CCGCUGUGCCCGCGGCaGA------UGC-GGCg -5' |
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13977 | 5' | -60.5 | NC_003521.1 | + | 150677 | 0.79 | 0.227972 |
Target: 5'- cGGCGGCGCcgcugcugcuGGGUGCUG-CUGCGCCGg -3' miRNA: 3'- -CCGCUGUG----------CCCGCGGCaGAUGCGGCg -5' |
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13977 | 5' | -60.5 | NC_003521.1 | + | 240453 | 0.79 | 0.227972 |
Target: 5'- cGUGAgGCGGGCaGCgGUCgcagGCGCCGCc -3' miRNA: 3'- cCGCUgUGCCCG-CGgCAGa---UGCGGCG- -5' |
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13977 | 5' | -60.5 | NC_003521.1 | + | 40225 | 0.79 | 0.227972 |
Target: 5'- cGUGAgGCGGGCaGCgGUCgcagGCGCCGCc -3' miRNA: 3'- cCGCUgUGCCCG-CGgCAGa---UGCGGCG- -5' |
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13977 | 5' | -60.5 | NC_003521.1 | + | 129738 | 0.79 | 0.233175 |
Target: 5'- cGCGAgCGCGuccGCGCCGUCUuCGCCGCc -3' miRNA: 3'- cCGCU-GUGCc--CGCGGCAGAuGCGGCG- -5' |
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13977 | 5' | -60.5 | NC_003521.1 | + | 157932 | 0.78 | 0.243881 |
Target: 5'- uGGCGACgcgccaacaGCGGGUGCCGUCUuccgagaGCCGa -3' miRNA: 3'- -CCGCUG---------UGCCCGCGGCAGAug-----CGGCg -5' |
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13977 | 5' | -60.5 | NC_003521.1 | + | 116787 | 0.78 | 0.243881 |
Target: 5'- cGCGGCACGcugGCCGUCUACGgCCGCg -3' miRNA: 3'- cCGCUGUGCccgCGGCAGAUGC-GGCG- -5' |
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13977 | 5' | -60.5 | NC_003521.1 | + | 5672 | 0.78 | 0.259552 |
Target: 5'- gGGUcgaGACACGGGCGcCCGUCcgcggggaacggGCGCCGUc -3' miRNA: 3'- -CCG---CUGUGCCCGC-GGCAGa-----------UGCGGCG- -5' |
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13977 | 5' | -60.5 | NC_003521.1 | + | 60710 | 0.78 | 0.260702 |
Target: 5'- gGGCGGCGCGGGuCGCa--CcACGCCGCu -3' miRNA: 3'- -CCGCUGUGCCC-GCGgcaGaUGCGGCG- -5' |
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13977 | 5' | -60.5 | NC_003521.1 | + | 74587 | 0.77 | 0.280895 |
Target: 5'- cGGCGGCGCGGcgucccgcggccggcGCGCC-UCgcCGCCGCg -3' miRNA: 3'- -CCGCUGUGCC---------------CGCGGcAGauGCGGCG- -5' |
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13977 | 5' | -60.5 | NC_003521.1 | + | 91087 | 0.77 | 0.290819 |
Target: 5'- cGCaACAgGGGC-CCGUCUGCGCCuGCg -3' miRNA: 3'- cCGcUGUgCCCGcGGCAGAUGCGG-CG- -5' |
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13977 | 5' | -60.5 | NC_003521.1 | + | 38442 | 0.77 | 0.299726 |
Target: 5'- gGGUGACACGGGUGacgaugaaaCCGUCUgggcucuggcgguggGCGCCGg -3' miRNA: 3'- -CCGCUGUGCCCGC---------GGCAGA---------------UGCGGCg -5' |
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13977 | 5' | -60.5 | NC_003521.1 | + | 221820 | 0.77 | 0.310163 |
Target: 5'- cGGCGGgGCGGGCG-UGUCUcccuCGUCGCg -3' miRNA: 3'- -CCGCUgUGCCCGCgGCAGAu---GCGGCG- -5' |
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13977 | 5' | -60.5 | NC_003521.1 | + | 78674 | 0.77 | 0.310163 |
Target: 5'- cGGCG-CAgGGGaagcCGCCGUCUGCGCUcauGCa -3' miRNA: 3'- -CCGCuGUgCCC----GCGGCAGAUGCGG---CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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