miRNA display CGI


Results 1 - 20 of 531 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13977 5' -60.5 NC_003521.1 + 74151 0.75 0.388524
Target:  5'- cGCGcCACGGGgCccaggugccgcugGCCGaCUGCGCCGCg -3'
miRNA:   3'- cCGCuGUGCCC-G-------------CGGCaGAUGCGGCG- -5'
13977 5' -60.5 NC_003521.1 + 78674 0.77 0.310163
Target:  5'- cGGCG-CAgGGGaagcCGCCGUCUGCGCUcauGCa -3'
miRNA:   3'- -CCGCuGUgCCC----GCGGCAGAUGCGG---CG- -5'
13977 5' -60.5 NC_003521.1 + 221820 0.77 0.310163
Target:  5'- cGGCGGgGCGGGCG-UGUCUcccuCGUCGCg -3'
miRNA:   3'- -CCGCUgUGCCCGCgGCAGAu---GCGGCG- -5'
13977 5' -60.5 NC_003521.1 + 39875 0.76 0.316825
Target:  5'- cGGCGAU-CGGGCGCCGUacagggugUugGCCGa -3'
miRNA:   3'- -CCGCUGuGCCCGCGGCAg-------AugCGGCg -5'
13977 5' -60.5 NC_003521.1 + 145869 0.76 0.337454
Target:  5'- cGGCGGCGgGcGGCGCCGaCgacgAgGCCGCc -3'
miRNA:   3'- -CCGCUGUgC-CCGCGGCaGa---UgCGGCG- -5'
13977 5' -60.5 NC_003521.1 + 140297 0.76 0.351741
Target:  5'- cGCGuCACGGGCaggcCCGUCgACGUCGCu -3'
miRNA:   3'- cCGCuGUGCCCGc---GGCAGaUGCGGCG- -5'
13977 5' -60.5 NC_003521.1 + 36304 0.75 0.359044
Target:  5'- cGCGACaacuACGGGCGCUGcgugcgCUACGCCa- -3'
miRNA:   3'- cCGCUG----UGCCCGCGGCa-----GAUGCGGcg -5'
13977 5' -60.5 NC_003521.1 + 69783 0.75 0.366452
Target:  5'- cGGCGACGaGGGagcgGCCGUCgagaugACGCuCGCa -3'
miRNA:   3'- -CCGCUGUgCCCg---CGGCAGa-----UGCG-GCG- -5'
13977 5' -60.5 NC_003521.1 + 201356 0.75 0.378522
Target:  5'- aGGCGGCgACGGGacacgaaccgcUGCCGUCcccgggagccacgGCGCCGCc -3'
miRNA:   3'- -CCGCUG-UGCCC-----------GCGGCAGa------------UGCGGCG- -5'
13977 5' -60.5 NC_003521.1 + 38442 0.77 0.299726
Target:  5'- gGGUGACACGGGUGacgaugaaaCCGUCUgggcucuggcgguggGCGCCGg -3'
miRNA:   3'- -CCGCUGUGCCCGC---------GGCAGA---------------UGCGGCg -5'
13977 5' -60.5 NC_003521.1 + 91087 0.77 0.290819
Target:  5'- cGCaACAgGGGC-CCGUCUGCGCCuGCg -3'
miRNA:   3'- cCGcUGUgCCCGcGGCAGAUGCGG-CG- -5'
13977 5' -60.5 NC_003521.1 + 74587 0.77 0.280895
Target:  5'- cGGCGGCGCGGcgucccgcggccggcGCGCC-UCgcCGCCGCg -3'
miRNA:   3'- -CCGCUGUGCC---------------CGCGGcAGauGCGGCG- -5'
13977 5' -60.5 NC_003521.1 + 79633 0.8 0.189806
Target:  5'- cGCGGCGCcucGGCGUCGUCUGCuGCUGCa -3'
miRNA:   3'- cCGCUGUGc--CCGCGGCAGAUG-CGGCG- -5'
13977 5' -60.5 NC_003521.1 + 138709 0.79 0.222868
Target:  5'- gGGCGGCACGGGCGCUGgCUggugguGCGuCCGg -3'
miRNA:   3'- -CCGCUGUGCCCGCGGCaGA------UGC-GGCg -5'
13977 5' -60.5 NC_003521.1 + 150677 0.79 0.227972
Target:  5'- cGGCGGCGCcgcugcugcuGGGUGCUG-CUGCGCCGg -3'
miRNA:   3'- -CCGCUGUG----------CCCGCGGCaGAUGCGGCg -5'
13977 5' -60.5 NC_003521.1 + 240453 0.79 0.227972
Target:  5'- cGUGAgGCGGGCaGCgGUCgcagGCGCCGCc -3'
miRNA:   3'- cCGCUgUGCCCG-CGgCAGa---UGCGGCG- -5'
13977 5' -60.5 NC_003521.1 + 129738 0.79 0.233175
Target:  5'- cGCGAgCGCGuccGCGCCGUCUuCGCCGCc -3'
miRNA:   3'- cCGCU-GUGCc--CGCGGCAGAuGCGGCG- -5'
13977 5' -60.5 NC_003521.1 + 116787 0.78 0.243881
Target:  5'- cGCGGCACGcugGCCGUCUACGgCCGCg -3'
miRNA:   3'- cCGCUGUGCccgCGGCAGAUGC-GGCG- -5'
13977 5' -60.5 NC_003521.1 + 5672 0.78 0.259552
Target:  5'- gGGUcgaGACACGGGCGcCCGUCcgcggggaacggGCGCCGUc -3'
miRNA:   3'- -CCG---CUGUGCCCGC-GGCAGa-----------UGCGGCG- -5'
13977 5' -60.5 NC_003521.1 + 60710 0.78 0.260702
Target:  5'- gGGCGGCGCGGGuCGCa--CcACGCCGCu -3'
miRNA:   3'- -CCGCUGUGCCC-GCGgcaGaUGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.