miRNA display CGI


Results 1 - 20 of 531 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13977 5' -60.5 NC_003521.1 + 364 0.68 0.749459
Target:  5'- aGGCGGCGCcuGCGaCCG-CUGC-CCGCc -3'
miRNA:   3'- -CCGCUGUGccCGC-GGCaGAUGcGGCG- -5'
13977 5' -60.5 NC_003521.1 + 983 0.66 0.854958
Target:  5'- cGGCGGucugcuccCGUGGGCcgGCCGuacggcuUCUACGCgCGCa -3'
miRNA:   3'- -CCGCU--------GUGCCCG--CGGC-------AGAUGCG-GCG- -5'
13977 5' -60.5 NC_003521.1 + 1128 0.75 0.378522
Target:  5'- aGGCGGCgACGGGacacgaaccgcUGCCGUCcccgggagccacgGCGCCGCc -3'
miRNA:   3'- -CCGCUG-UGCCC-----------GCGGCAGa------------UGCGGCG- -5'
13977 5' -60.5 NC_003521.1 + 1366 0.69 0.71304
Target:  5'- cGCGcCGCGGGCcaccGCUGUCcccgagcccGCGCUGCu -3'
miRNA:   3'- cCGCuGUGCCCG----CGGCAGa--------UGCGGCG- -5'
13977 5' -60.5 NC_003521.1 + 1421 0.68 0.749459
Target:  5'- aGCGACGacgugaacgaacUGGGcCGCgagCUGCGCCGCc -3'
miRNA:   3'- cCGCUGU------------GCCC-GCGgcaGAUGCGGCG- -5'
13977 5' -60.5 NC_003521.1 + 1631 0.69 0.71304
Target:  5'- gGGUGGCuguuucUGGGCGUCGUgCUGCccaGUCGCu -3'
miRNA:   3'- -CCGCUGu-----GCCCGCGGCA-GAUG---CGGCG- -5'
13977 5' -60.5 NC_003521.1 + 2331 0.67 0.809501
Target:  5'- cGGCcucCugGGGCuGCUGaccCUGgGCCGCg -3'
miRNA:   3'- -CCGcu-GugCCCG-CGGCa--GAUgCGGCG- -5'
13977 5' -60.5 NC_003521.1 + 3643 0.66 0.854958
Target:  5'- aGCGugcCACGGccgcCGCCGUCUGCcucggcgGCCGg -3'
miRNA:   3'- cCGCu--GUGCCc---GCGGCAGAUG-------CGGCg -5'
13977 5' -60.5 NC_003521.1 + 5672 0.78 0.259552
Target:  5'- gGGUcgaGACACGGGCGcCCGUCcgcggggaacggGCGCCGUc -3'
miRNA:   3'- -CCG---CUGUGCCCGC-GGCAGa-----------UGCGGCG- -5'
13977 5' -60.5 NC_003521.1 + 5692 0.67 0.792934
Target:  5'- uGGUGGCGaucaccauccCGGGgGCUGUCUAuCGCUa- -3'
miRNA:   3'- -CCGCUGU----------GCCCgCGGCAGAU-GCGGcg -5'
13977 5' -60.5 NC_003521.1 + 6384 0.68 0.740469
Target:  5'- cGCGG-AgGGGCGCCGcagCUAcCGCgGCg -3'
miRNA:   3'- cCGCUgUgCCCGCGGCa--GAU-GCGgCG- -5'
13977 5' -60.5 NC_003521.1 + 6524 0.68 0.731398
Target:  5'- cGGUGACGaGGGCG--GUCUGCGucCCGCc -3'
miRNA:   3'- -CCGCUGUgCCCGCggCAGAUGC--GGCG- -5'
13977 5' -60.5 NC_003521.1 + 6598 0.68 0.767166
Target:  5'- -uUGAuCACGGGCGaaacggaaCCGUCUucggAgGCCGCg -3'
miRNA:   3'- ccGCU-GUGCCCGC--------GGCAGA----UgCGGCG- -5'
13977 5' -60.5 NC_003521.1 + 7737 0.71 0.571636
Target:  5'- gGGCGGCGCGagcggcggaggcGGCGgCaGUCccagcagACGCCGCa -3'
miRNA:   3'- -CCGCUGUGC------------CCGCgG-CAGa------UGCGGCG- -5'
13977 5' -60.5 NC_003521.1 + 7990 0.69 0.694445
Target:  5'- cGGCGGCGgGGGagguaCCGgggCaGCGCCGUa -3'
miRNA:   3'- -CCGCUGUgCCCgc---GGCa--GaUGCGGCG- -5'
13977 5' -60.5 NC_003521.1 + 8404 0.69 0.71304
Target:  5'- -cCGACACGcaGGCGCUGgcgUUGCcguGCCGCa -3'
miRNA:   3'- ccGCUGUGC--CCGCGGCa--GAUG---CGGCG- -5'
13977 5' -60.5 NC_003521.1 + 8910 0.67 0.78446
Target:  5'- uGGCuacGGCGCGGGagaagaGCCG-CU--GCCGCa -3'
miRNA:   3'- -CCG---CUGUGCCCg-----CGGCaGAugCGGCG- -5'
13977 5' -60.5 NC_003521.1 + 11552 0.73 0.480552
Target:  5'- cGCuACGCcuccGGCGCCGUCgUGCGCCGg -3'
miRNA:   3'- cCGcUGUGc---CCGCGGCAG-AUGCGGCg -5'
13977 5' -60.5 NC_003521.1 + 13851 0.71 0.580082
Target:  5'- uGGCucGGCGCGGGgGUC-UCUgcgggcgGCGCCGCc -3'
miRNA:   3'- -CCG--CUGUGCCCgCGGcAGA-------UGCGGCG- -5'
13977 5' -60.5 NC_003521.1 + 13907 0.66 0.85568
Target:  5'- cGGCG-CGgaGGGgGCCGcggAgGCCGCg -3'
miRNA:   3'- -CCGCuGUg-CCCgCGGCagaUgCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.