miRNA display CGI


Results 1 - 20 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13978 5' -54.2 NC_003521.1 + 113872 0.66 0.984023
Target:  5'- gUGGugUAa-GCGcCGuCACgugUCGCCCGCa -3'
miRNA:   3'- -ACCugAUagUGCuGC-GUG---AGUGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 83763 0.66 0.987318
Target:  5'- gGGACaggGUgGCGGCGC-C-C-CCCGCc -3'
miRNA:   3'- aCCUGa--UAgUGCUGCGuGaGuGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 120569 0.66 0.987318
Target:  5'- uUGGG-UGUCgagGCGAUGCACggcgCGgCCGCc -3'
miRNA:   3'- -ACCUgAUAG---UGCUGCGUGa---GUgGGCG- -5'
13978 5' -54.2 NC_003521.1 + 196408 0.66 0.98215
Target:  5'- aUGGGCgggcaGCGGCacagacagucGCugUCGCCCGg -3'
miRNA:   3'- -ACCUGauag-UGCUG----------CGugAGUGGGCg -5'
13978 5' -54.2 NC_003521.1 + 96470 0.66 0.988755
Target:  5'- cGGugUAgaaGCGGCgaaagGCGCgCACCCGg -3'
miRNA:   3'- aCCugAUag-UGCUG-----CGUGaGUGGGCg -5'
13978 5' -54.2 NC_003521.1 + 111592 0.66 0.984023
Target:  5'- cGGACU---GCGugGUAgucuuccuCUCGcCCCGCg -3'
miRNA:   3'- aCCUGAuagUGCugCGU--------GAGU-GGGCG- -5'
13978 5' -54.2 NC_003521.1 + 167555 0.66 0.979904
Target:  5'- cGGACgUGUCgguaaugACGGCGCucguCgUCACgCCGCu -3'
miRNA:   3'- aCCUG-AUAG-------UGCUGCGu---G-AGUG-GGCG- -5'
13978 5' -54.2 NC_003521.1 + 132452 0.66 0.985743
Target:  5'- gUGGGCUGUU-CGGCGCGuCcggUCAgCCGUc -3'
miRNA:   3'- -ACCUGAUAGuGCUGCGU-G---AGUgGGCG- -5'
13978 5' -54.2 NC_003521.1 + 141569 0.66 0.985743
Target:  5'- cUGGACcucgcgCGCGACGaCGCgCGCaCCGUc -3'
miRNA:   3'- -ACCUGaua---GUGCUGC-GUGaGUG-GGCG- -5'
13978 5' -54.2 NC_003521.1 + 111477 0.66 0.983661
Target:  5'- cGGGCcuuucccuccuUCGCGGCGCucaAC-CGCCUGCu -3'
miRNA:   3'- aCCUGau---------AGUGCUGCG---UGaGUGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 187983 0.66 0.980117
Target:  5'- aGGACcaGUCGuCGAUGCugUCGaucuccaCCGCc -3'
miRNA:   3'- aCCUGa-UAGU-GCUGCGugAGUg------GGCG- -5'
13978 5' -54.2 NC_003521.1 + 202568 0.66 0.985743
Target:  5'- gGGGCUGcugaccCugGGcCGCGuCUCGcCCCGCc -3'
miRNA:   3'- aCCUGAUa-----GugCU-GCGU-GAGU-GGGCG- -5'
13978 5' -54.2 NC_003521.1 + 140832 0.66 0.984023
Target:  5'- cGGcCUuccGUCACGACGUGCUggagCGCUuCGCg -3'
miRNA:   3'- aCCuGA---UAGUGCUGCGUGA----GUGG-GCG- -5'
13978 5' -54.2 NC_003521.1 + 91446 0.66 0.980117
Target:  5'- gGGGCUuucuaugCGCGcauACGCGCgcaGCUCGCg -3'
miRNA:   3'- aCCUGAua-----GUGC---UGCGUGag-UGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 138034 0.66 0.984023
Target:  5'- --cGCUG-C-CGGCGCACggggcugugggUCGCCCGCg -3'
miRNA:   3'- accUGAUaGuGCUGCGUG-----------AGUGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 66530 0.66 0.979904
Target:  5'- cUGGACaagAUCGCcgaccucaaGACGCGCuUCACCgaccuggCGCg -3'
miRNA:   3'- -ACCUGa--UAGUG---------CUGCGUG-AGUGG-------GCG- -5'
13978 5' -54.2 NC_003521.1 + 76517 0.66 0.984023
Target:  5'- gGGACcg-CGCGACaccagggccuGCGCcgUCAgCCCGCg -3'
miRNA:   3'- aCCUGauaGUGCUG----------CGUG--AGU-GGGCG- -5'
13978 5' -54.2 NC_003521.1 + 149063 0.66 0.987318
Target:  5'- cUGGGCUucgaCGCGGcCGCGCUC--UCGCa -3'
miRNA:   3'- -ACCUGAua--GUGCU-GCGUGAGugGGCG- -5'
13978 5' -54.2 NC_003521.1 + 4603 0.66 0.987167
Target:  5'- cGGGCcg-CGCGGgGgAacaugacCUCACCCGCu -3'
miRNA:   3'- aCCUGauaGUGCUgCgU-------GAGUGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 129686 0.66 0.985743
Target:  5'- aGGAgCUGU--CGACGgGCgaggaCGCCCGCu -3'
miRNA:   3'- aCCU-GAUAguGCUGCgUGa----GUGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.