miRNA display CGI


Results 1 - 20 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13978 5' -54.2 NC_003521.1 + 679 0.74 0.723755
Target:  5'- gGGGCUAUauaACGcCGCGCUCuucgcGCUCGCa -3'
miRNA:   3'- aCCUGAUAg--UGCuGCGUGAG-----UGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 4361 0.7 0.914757
Target:  5'- cGGuucGCUcAUCGCGGCccGCgucccgcucgcucACUCACCCGCu -3'
miRNA:   3'- aCC---UGA-UAGUGCUG--CG-------------UGAGUGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 4603 0.66 0.987167
Target:  5'- cGGGCcg-CGCGGgGgAacaugacCUCACCCGCu -3'
miRNA:   3'- aCCUGauaGUGCUgCgU-------GAGUGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 7442 0.71 0.855359
Target:  5'- cGGAC----GCGGCGCACagCACCaCGCg -3'
miRNA:   3'- aCCUGauagUGCUGCGUGa-GUGG-GCG- -5'
13978 5' -54.2 NC_003521.1 + 12080 0.66 0.985743
Target:  5'- -aGAUgcgCACGcCGCuGCUCACCaCGCa -3'
miRNA:   3'- acCUGauaGUGCuGCG-UGAGUGG-GCG- -5'
13978 5' -54.2 NC_003521.1 + 12736 0.68 0.956155
Target:  5'- cUGGACgagGUUucCGGCGC-CUCggacgugagcugggACCCGCg -3'
miRNA:   3'- -ACCUGa--UAGu-GCUGCGuGAG--------------UGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 15961 0.66 0.98215
Target:  5'- cUGGACga-CugG-CGCGCUacgGCCUGCu -3'
miRNA:   3'- -ACCUGauaGugCuGCGUGAg--UGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 16056 0.66 0.98639
Target:  5'- cGGGCgcugcugCAcaacugccggagcccCGACGCGCUggcCGCCUGCg -3'
miRNA:   3'- aCCUGaua----GU---------------GCUGCGUGA---GUGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 16737 0.68 0.957263
Target:  5'- gGcGACcg-C-CGGCGCGCgCGCCCGCc -3'
miRNA:   3'- aC-CUGauaGuGCUGCGUGaGUGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 16843 0.68 0.960816
Target:  5'- aGGACaAUCACGugGUGCcugaCAacgaCCGCu -3'
miRNA:   3'- aCCUGaUAGUGCugCGUGa---GUg---GGCG- -5'
13978 5' -54.2 NC_003521.1 + 16863 0.72 0.83979
Target:  5'- cGGAC-GUCuACGACGUGCguUC-CCCGCg -3'
miRNA:   3'- aCCUGaUAG-UGCUGCGUG--AGuGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 17128 0.66 0.984023
Target:  5'- aGGuCgucgAUCcugcCGGCGCGCuUCGCCCGa -3'
miRNA:   3'- aCCuGa---UAGu---GCUGCGUG-AGUGGGCg -5'
13978 5' -54.2 NC_003521.1 + 17601 0.73 0.770901
Target:  5'- cUGGACgcgccaggcGUCGCGGCGUAUacgaACCCGCu -3'
miRNA:   3'- -ACCUGa--------UAGUGCUGCGUGag--UGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 18470 0.66 0.980117
Target:  5'- cGGGCUG-CGCGGCGagugUCGCCUGg -3'
miRNA:   3'- aCCUGAUaGUGCUGCgug-AGUGGGCg -5'
13978 5' -54.2 NC_003521.1 + 18987 0.68 0.96416
Target:  5'- aGGACgcgccgCGCGACGagggagACaCGCCCGCc -3'
miRNA:   3'- aCCUGaua---GUGCUGCg-----UGaGUGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 19058 0.69 0.931338
Target:  5'- aGGACggcggCGCGGCGCAgaCGCUgaCGCu -3'
miRNA:   3'- aCCUGaua--GUGCUGCGUgaGUGG--GCG- -5'
13978 5' -54.2 NC_003521.1 + 20182 0.66 0.98215
Target:  5'- cGGuCcgcGUCGCGACGUcaucgucgggaACUCGCgCGCu -3'
miRNA:   3'- aCCuGa--UAGUGCUGCG-----------UGAGUGgGCG- -5'
13978 5' -54.2 NC_003521.1 + 22091 0.8 0.400034
Target:  5'- gGGACcGUCcCGACGCcgcuuCUCGCCCGCc -3'
miRNA:   3'- aCCUGaUAGuGCUGCGu----GAGUGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 22414 0.67 0.977916
Target:  5'- cUGGccauGCUG-CGCGGCGUggccgaguAC-CGCCCGCg -3'
miRNA:   3'- -ACC----UGAUaGUGCUGCG--------UGaGUGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 22552 0.67 0.968498
Target:  5'- cGGGCUcccGUCAacacggucauguuccUGACGCGucgCACCCGUg -3'
miRNA:   3'- aCCUGA---UAGU---------------GCUGCGUga-GUGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.