miRNA display CGI


Results 1 - 20 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13978 5' -54.2 NC_003521.1 + 205388 1.13 0.004163
Target:  5'- aUGGACUAUCACGACGCACUCACCCGCa -3'
miRNA:   3'- -ACCUGAUAGUGCUGCGUGAGUGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 37214 0.81 0.383606
Target:  5'- gGGACUGUUcuucagcgGCGACGCGCUCAaCUGCa -3'
miRNA:   3'- aCCUGAUAG--------UGCUGCGUGAGUgGGCG- -5'
13978 5' -54.2 NC_003521.1 + 22091 0.8 0.400034
Target:  5'- gGGACcGUCcCGACGCcgcuuCUCGCCCGCc -3'
miRNA:   3'- aCCUGaUAGuGCUGCGu----GAGUGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 136117 0.78 0.507246
Target:  5'- gGGACUGgugUACGAgGCGCUCuacCCCGUg -3'
miRNA:   3'- aCCUGAUa--GUGCUgCGUGAGu--GGGCG- -5'
13978 5' -54.2 NC_003521.1 + 37117 0.76 0.614878
Target:  5'- cGGACaagAUCACGGCGCGCaaCAUgCCGCg -3'
miRNA:   3'- aCCUGa--UAGUGCUGCGUGa-GUG-GGCG- -5'
13978 5' -54.2 NC_003521.1 + 110326 0.76 0.624865
Target:  5'- aGGGCcAUCAUGACGCGgCcgCGCUCGCg -3'
miRNA:   3'- aCCUGaUAGUGCUGCGU-Ga-GUGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 49678 0.76 0.634857
Target:  5'- cGGGCgagCGCGGCGCugUCGCCgucaGCc -3'
miRNA:   3'- aCCUGauaGUGCUGCGugAGUGGg---CG- -5'
13978 5' -54.2 NC_003521.1 + 112270 0.76 0.644847
Target:  5'- aGGGgaGUCACGGCgGCACUCugCCa- -3'
miRNA:   3'- aCCUgaUAGUGCUG-CGUGAGugGGcg -5'
13978 5' -54.2 NC_003521.1 + 38958 0.76 0.644847
Target:  5'- cUGGGCag-CACGACGCccagaaacaGC-CACCCGCa -3'
miRNA:   3'- -ACCUGauaGUGCUGCG---------UGaGUGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 239186 0.76 0.644847
Target:  5'- cUGGGCag-CACGACGCccagaaacaGC-CACCCGCa -3'
miRNA:   3'- -ACCUGauaGUGCUGCG---------UGaGUGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 72213 0.75 0.674728
Target:  5'- cGuGACUG-CACGagGCGCACUCGCCgUGCa -3'
miRNA:   3'- aC-CUGAUaGUGC--UGCGUGAGUGG-GCG- -5'
13978 5' -54.2 NC_003521.1 + 679 0.74 0.723755
Target:  5'- gGGGCUAUauaACGcCGCGCUCuucgcGCUCGCa -3'
miRNA:   3'- aCCUGAUAg--UGCuGCGUGAG-----UGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 157972 0.74 0.742899
Target:  5'- cGGcGCUGguaGCGACGcCGC-CGCCCGCg -3'
miRNA:   3'- aCC-UGAUag-UGCUGC-GUGaGUGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 152211 0.73 0.761674
Target:  5'- cGGACgagGUCACGGCGCACgUGgCUGUg -3'
miRNA:   3'- aCCUGa--UAGUGCUGCGUGaGUgGGCG- -5'
13978 5' -54.2 NC_003521.1 + 119383 0.73 0.761674
Target:  5'- aGGACcuaacCAUGACGCGCa-ACCCGCa -3'
miRNA:   3'- aCCUGaua--GUGCUGCGUGagUGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 49551 0.73 0.761674
Target:  5'- uUGGGC-GUCAUGAagaGCAC-CACCUGCc -3'
miRNA:   3'- -ACCUGaUAGUGCUg--CGUGaGUGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 17601 0.73 0.770901
Target:  5'- cUGGACgcgccaggcGUCGCGGCGUAUacgaACCCGCu -3'
miRNA:   3'- -ACCUGa--------UAGUGCUGCGUGag--UGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 117513 0.73 0.788995
Target:  5'- cGGACggcuggaaCugGACGCcgAgUCGCCCGCg -3'
miRNA:   3'- aCCUGaua-----GugCUGCG--UgAGUGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 190991 0.73 0.797843
Target:  5'- cUGGACggccgucugCACGGCGCACUgcacggCGCCCaGCc -3'
miRNA:   3'- -ACCUGaua------GUGCUGCGUGA------GUGGG-CG- -5'
13978 5' -54.2 NC_003521.1 + 129224 0.72 0.815104
Target:  5'- gUGGGCaGUC-CGGCGcCGCUgGCCaCGCg -3'
miRNA:   3'- -ACCUGaUAGuGCUGC-GUGAgUGG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.