miRNA display CGI


Results 1 - 20 of 246 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13978 5' -54.2 NC_003521.1 + 104402 0.71 0.862117
Target:  5'- aGGGCUAccUCGCGGacgGCugUCugccucacacgcgGCCCGCg -3'
miRNA:   3'- aCCUGAU--AGUGCUg--CGugAG-------------UGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 187589 0.72 0.823501
Target:  5'- gGGGCU-UCGcCGGCGguCGCuUCGCCCGCg -3'
miRNA:   3'- aCCUGAuAGU-GCUGC--GUG-AGUGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 144279 0.72 0.831732
Target:  5'- cUGGGCgagCACGGCGacuCGCUgCugCCGCa -3'
miRNA:   3'- -ACCUGauaGUGCUGC---GUGA-GugGGCG- -5'
13978 5' -54.2 NC_003521.1 + 149455 0.72 0.83979
Target:  5'- cUGGACccaccUCuACGACGCGCUCuuUCGCg -3'
miRNA:   3'- -ACCUGau---AG-UGCUGCGUGAGugGGCG- -5'
13978 5' -54.2 NC_003521.1 + 16863 0.72 0.83979
Target:  5'- cGGAC-GUCuACGACGUGCguUC-CCCGCg -3'
miRNA:   3'- aCCUGaUAG-UGCUGCGUG--AGuGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 69339 0.71 0.847668
Target:  5'- --aGCUGUCGCG--GUACUCGCCCGUc -3'
miRNA:   3'- accUGAUAGUGCugCGUGAGUGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 221930 0.71 0.847668
Target:  5'- gGGGCUGcCGCGGCGC-CUCGuCCuCGUc -3'
miRNA:   3'- aCCUGAUaGUGCUGCGuGAGU-GG-GCG- -5'
13978 5' -54.2 NC_003521.1 + 7442 0.71 0.855359
Target:  5'- cGGAC----GCGGCGCACagCACCaCGCg -3'
miRNA:   3'- aCCUGauagUGCUGCGUGa-GUGG-GCG- -5'
13978 5' -54.2 NC_003521.1 + 100980 0.71 0.855359
Target:  5'- cGGcGCg--CACGGCGUuCUCGCUCGCu -3'
miRNA:   3'- aCC-UGauaGUGCUGCGuGAGUGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 129224 0.72 0.815104
Target:  5'- gUGGGCaGUC-CGGCGcCGCUgGCCaCGCg -3'
miRNA:   3'- -ACCUGaUAGuGCUGC-GUGAgUGG-GCG- -5'
13978 5' -54.2 NC_003521.1 + 190991 0.73 0.797843
Target:  5'- cUGGACggccgucugCACGGCGCACUgcacggCGCCCaGCc -3'
miRNA:   3'- -ACCUGaua------GUGCUGCGUGA------GUGGG-CG- -5'
13978 5' -54.2 NC_003521.1 + 17601 0.73 0.770901
Target:  5'- cUGGACgcgccaggcGUCGCGGCGUAUacgaACCCGCu -3'
miRNA:   3'- -ACCUGa--------UAGUGCUGCGUGag--UGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 136117 0.78 0.507246
Target:  5'- gGGACUGgugUACGAgGCGCUCuacCCCGUg -3'
miRNA:   3'- aCCUGAUa--GUGCUgCGUGAGu--GGGCG- -5'
13978 5' -54.2 NC_003521.1 + 37117 0.76 0.614878
Target:  5'- cGGACaagAUCACGGCGCGCaaCAUgCCGCg -3'
miRNA:   3'- aCCUGa--UAGUGCUGCGUGa-GUG-GGCG- -5'
13978 5' -54.2 NC_003521.1 + 112270 0.76 0.644847
Target:  5'- aGGGgaGUCACGGCgGCACUCugCCa- -3'
miRNA:   3'- aCCUgaUAGUGCUG-CGUGAGugGGcg -5'
13978 5' -54.2 NC_003521.1 + 239186 0.76 0.644847
Target:  5'- cUGGGCag-CACGACGCccagaaacaGC-CACCCGCa -3'
miRNA:   3'- -ACCUGauaGUGCUGCG---------UGaGUGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 72213 0.75 0.674728
Target:  5'- cGuGACUG-CACGagGCGCACUCGCCgUGCa -3'
miRNA:   3'- aC-CUGAUaGUGC--UGCGUGAGUGG-GCG- -5'
13978 5' -54.2 NC_003521.1 + 679 0.74 0.723755
Target:  5'- gGGGCUAUauaACGcCGCGCUCuucgcGCUCGCa -3'
miRNA:   3'- aCCUGAUAg--UGCuGCGUGAG-----UGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 157972 0.74 0.742899
Target:  5'- cGGcGCUGguaGCGACGcCGC-CGCCCGCg -3'
miRNA:   3'- aCC-UGAUag-UGCUGC-GUGaGUGGGCG- -5'
13978 5' -54.2 NC_003521.1 + 49551 0.73 0.761674
Target:  5'- uUGGGC-GUCAUGAagaGCAC-CACCUGCc -3'
miRNA:   3'- -ACCUGaUAGUGCUg--CGUGaGUGGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.