miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13981 3' -53.8 NC_003521.1 + 101717 0.66 0.987777
Target:  5'- aGCacgAUGcGCGgcGGGGGC-GAGAUGGg -3'
miRNA:   3'- -CGaa-UGC-CGCuuCUCCCGgUUCUGCC- -5'
13981 3' -53.8 NC_003521.1 + 131099 0.66 0.991476
Target:  5'- gGCUccggACGGCGggGcGGcgcggcuGCCGGGAaGGg -3'
miRNA:   3'- -CGAa---UGCCGCuuCuCC-------CGGUUCUgCC- -5'
13981 3' -53.8 NC_003521.1 + 35807 0.66 0.986248
Target:  5'- --cUACGGCGgcGuGGGCgAGaaccuGGCGGu -3'
miRNA:   3'- cgaAUGCCGCuuCuCCCGgUU-----CUGCC- -5'
13981 3' -53.8 NC_003521.1 + 216138 0.66 0.990438
Target:  5'- ---cGCGGCaGAGGAaGGCCAccuGGGCGc -3'
miRNA:   3'- cgaaUGCCG-CUUCUcCCGGU---UCUGCc -5'
13981 3' -53.8 NC_003521.1 + 39451 0.66 0.99007
Target:  5'- aGCc--CGGCGccGAGGGCCGcgucgaaggauugcGGAuCGGc -3'
miRNA:   3'- -CGaauGCCGCuuCUCCCGGU--------------UCU-GCC- -5'
13981 3' -53.8 NC_003521.1 + 142939 0.66 0.989171
Target:  5'- ---aGCGGCGGucAGGGUCA--GCGGg -3'
miRNA:   3'- cgaaUGCCGCUucUCCCGGUucUGCC- -5'
13981 3' -53.8 NC_003521.1 + 128912 0.66 0.990438
Target:  5'- cGCUggaUGCGGUu--GAGGGCCu-GGCGc -3'
miRNA:   3'- -CGA---AUGCCGcuuCUCCCGGuuCUGCc -5'
13981 3' -53.8 NC_003521.1 + 74913 0.66 0.986248
Target:  5'- ---gGCGGUGGAGucGGCCcGGcagcGCGGg -3'
miRNA:   3'- cgaaUGCCGCUUCucCCGGuUC----UGCC- -5'
13981 3' -53.8 NC_003521.1 + 98540 0.66 0.992013
Target:  5'- cGCUgcagcgGCGGCGGGucccagcccgagcccGAGucGGCCGAGgaggaGCGGg -3'
miRNA:   3'- -CGAa-----UGCCGCUU---------------CUC--CCGGUUC-----UGCC- -5'
13981 3' -53.8 NC_003521.1 + 112076 0.66 0.987777
Target:  5'- ---cGCGGUGggGAucagGGGCgGcuGGCGGg -3'
miRNA:   3'- cgaaUGCCGCuuCU----CCCGgUu-CUGCC- -5'
13981 3' -53.8 NC_003521.1 + 43447 0.66 0.98835
Target:  5'- ---gGCGGCGGcccuggaacucucacAGcGGGCCAGcGCGGc -3'
miRNA:   3'- cgaaUGCCGCU---------------UCuCCCGGUUcUGCC- -5'
13981 3' -53.8 NC_003521.1 + 118676 0.66 0.987777
Target:  5'- gGCUUcgggagGCGGCGGuaccgcugguGGAGGGCaggcucauGGGCGa -3'
miRNA:   3'- -CGAA------UGCCGCU----------UCUCCCGgu------UCUGCc -5'
13981 3' -53.8 NC_003521.1 + 132991 0.66 0.990438
Target:  5'- ---aACGGgGGAccGGGGUUggGACGGg -3'
miRNA:   3'- cgaaUGCCgCUUc-UCCCGGuuCUGCC- -5'
13981 3' -53.8 NC_003521.1 + 159766 0.66 0.986248
Target:  5'- cGCUUaACGGUuacuGGGGGGUU-GGACGGa -3'
miRNA:   3'- -CGAA-UGCCGcu--UCUCCCGGuUCUGCC- -5'
13981 3' -53.8 NC_003521.1 + 137254 0.66 0.986248
Target:  5'- gGCcgACGGCGGcAGcGGGCaGAG-CGGg -3'
miRNA:   3'- -CGaaUGCCGCU-UCuCCCGgUUCuGCC- -5'
13981 3' -53.8 NC_003521.1 + 205133 0.66 0.986248
Target:  5'- cGUcgAUGGUGAAccAGGGCCGGGugGc -3'
miRNA:   3'- -CGaaUGCCGCUUc-UCCCGGUUCugCc -5'
13981 3' -53.8 NC_003521.1 + 196878 0.66 0.986248
Target:  5'- ---aACGGCaccgcGGGuGaGGCCGGGGCGGa -3'
miRNA:   3'- cgaaUGCCGc----UUCuC-CCGGUUCUGCC- -5'
13981 3' -53.8 NC_003521.1 + 86252 0.66 0.989171
Target:  5'- cGUgcAgGGCGAAGucGGCCGgcgAGGCGa -3'
miRNA:   3'- -CGaaUgCCGCUUCucCCGGU---UCUGCc -5'
13981 3' -53.8 NC_003521.1 + 48259 0.66 0.986087
Target:  5'- ---cGCGGgGGaagggagAGAGGGagAAGACGGg -3'
miRNA:   3'- cgaaUGCCgCU-------UCUCCCggUUCUGCC- -5'
13981 3' -53.8 NC_003521.1 + 102676 0.66 0.986087
Target:  5'- uGCUUGagcaGGuCGAAGGGGaacaugcugcgguGCCAGGucuCGGa -3'
miRNA:   3'- -CGAAUg---CC-GCUUCUCC-------------CGGUUCu--GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.