miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13981 3' -53.8 NC_003521.1 + 238460 0.71 0.893073
Target:  5'- gGCggccuCGGCGGGcGGGGCgGAGACGcGg -3'
miRNA:   3'- -CGaau--GCCGCUUcUCCCGgUUCUGC-C- -5'
13981 3' -53.8 NC_003521.1 + 238276 0.72 0.842607
Target:  5'- cGCUUAgcccuugguuuuUGGCGgcGAGGGCCAGuaccuCGGa -3'
miRNA:   3'- -CGAAU------------GCCGCuuCUCCCGGUUcu---GCC- -5'
13981 3' -53.8 NC_003521.1 + 109698 0.72 0.850408
Target:  5'- aGCUccugGCgGGCGAAGgccgagaggaaGGaGGCCAGGugGGa -3'
miRNA:   3'- -CGAa---UG-CCGCUUC-----------UC-CCGGUUCugCC- -5'
13981 3' -53.8 NC_003521.1 + 113365 0.72 0.858022
Target:  5'- gGCcgGgGGCGAggaGGAGGGUUAcGGCGGa -3'
miRNA:   3'- -CGaaUgCCGCU---UCUCCCGGUuCUGCC- -5'
13981 3' -53.8 NC_003521.1 + 4218 0.72 0.865441
Target:  5'- gGUUUGaagcCGGCcccggGAGGAGGaCCGAGACGGg -3'
miRNA:   3'- -CGAAU----GCCG-----CUUCUCCcGGUUCUGCC- -5'
13981 3' -53.8 NC_003521.1 + 86999 0.72 0.865441
Target:  5'- ---gGCGGCGGugauGAGGGCCAcgugcuGGAUGa -3'
miRNA:   3'- cgaaUGCCGCUu---CUCCCGGU------UCUGCc -5'
13981 3' -53.8 NC_003521.1 + 150927 0.72 0.865441
Target:  5'- ---cACGGCGu-GuGGGCCGAGcGCGGu -3'
miRNA:   3'- cgaaUGCCGCuuCuCCCGGUUC-UGCC- -5'
13981 3' -53.8 NC_003521.1 + 168348 0.71 0.872661
Target:  5'- aCUUGCuGGCGAAGAGcGGCgCGuaGCGGc -3'
miRNA:   3'- cGAAUG-CCGCUUCUC-CCG-GUucUGCC- -5'
13981 3' -53.8 NC_003521.1 + 88649 0.71 0.878984
Target:  5'- aGCga--GGCGcAGAGGGCCGccaggucGGugGGc -3'
miRNA:   3'- -CGaaugCCGCuUCUCCCGGU-------UCugCC- -5'
13981 3' -53.8 NC_003521.1 + 131204 0.72 0.833816
Target:  5'- cGC-UACGGCGAGaGGGGCCGgcgccagAGACa- -3'
miRNA:   3'- -CGaAUGCCGCUUcUCCCGGU-------UCUGcc -5'
13981 3' -53.8 NC_003521.1 + 154298 0.73 0.826465
Target:  5'- gGCggcACGGCGuccGGGGCCGAcGCGGg -3'
miRNA:   3'- -CGaa-UGCCGCuucUCCCGGUUcUGCC- -5'
13981 3' -53.8 NC_003521.1 + 54280 0.73 0.818139
Target:  5'- ---cACGGCGAAGAGG-CCGuuGCGGc -3'
miRNA:   3'- cgaaUGCCGCUUCUCCcGGUucUGCC- -5'
13981 3' -53.8 NC_003521.1 + 85616 0.75 0.707989
Target:  5'- ---gGC-GCGAAGAGGGCCGAGA-GGu -3'
miRNA:   3'- cgaaUGcCGCUUCUCCCGGUUCUgCC- -5'
13981 3' -53.8 NC_003521.1 + 52192 0.75 0.721574
Target:  5'- cGCcgggGCGGCGAGcucaucagacaguacGGGGGCCGguaGGGCGGc -3'
miRNA:   3'- -CGaa--UGCCGCUU---------------CUCCCGGU---UCUGCC- -5'
13981 3' -53.8 NC_003521.1 + 70357 0.75 0.727354
Target:  5'- aGCUUGuCGGCGggGuAGaGCCGcAGGCGGc -3'
miRNA:   3'- -CGAAU-GCCGCuuC-UCcCGGU-UCUGCC- -5'
13981 3' -53.8 NC_003521.1 + 5656 0.74 0.736925
Target:  5'- ---gGCGGCGGaggguGGGGGGUCGAGAcaCGGg -3'
miRNA:   3'- cgaaUGCCGCU-----UCUCCCGGUUCU--GCC- -5'
13981 3' -53.8 NC_003521.1 + 164952 0.74 0.746408
Target:  5'- gGCUcGCGucgcCGGAGAGGGCCcucuuucauggAGGACGGa -3'
miRNA:   3'- -CGAaUGCc---GCUUCUCCCGG-----------UUCUGCC- -5'
13981 3' -53.8 NC_003521.1 + 120945 0.74 0.746408
Target:  5'- gGCUc-CGGCGAGGggcaGGGGgCGGGGCGGu -3'
miRNA:   3'- -CGAauGCCGCUUC----UCCCgGUUCUGCC- -5'
13981 3' -53.8 NC_003521.1 + 193267 0.73 0.809652
Target:  5'- gGUcgGCuGCGGAGcGGGuGCCGGGACGGg -3'
miRNA:   3'- -CGaaUGcCGCUUC-UCC-CGGUUCUGCC- -5'
13981 3' -53.8 NC_003521.1 + 48936 0.73 0.809652
Target:  5'- ---aGCGGCGggGAGGGagAAG-CGGu -3'
miRNA:   3'- cgaaUGCCGCuuCUCCCggUUCuGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.