miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13981 3' -53.8 NC_003521.1 + 204786 1.12 0.005409
Target:  5'- gGCUUACGGCGAAGAGGGCCAAGACGGu -3'
miRNA:   3'- -CGAAUGCCGCUUCUCCCGGUUCUGCC- -5'
13981 3' -53.8 NC_003521.1 + 223934 0.81 0.387056
Target:  5'- ---cGCGGCcGAGGGGGUCGAGGCGGc -3'
miRNA:   3'- cgaaUGCCGcUUCUCCCGGUUCUGCC- -5'
13981 3' -53.8 NC_003521.1 + 58069 0.77 0.618763
Target:  5'- --aUACGGCGAAGAGGGCagcAGA-GGa -3'
miRNA:   3'- cgaAUGCCGCUUCUCCCGgu-UCUgCC- -5'
13981 3' -53.8 NC_003521.1 + 155492 0.77 0.618763
Target:  5'- gGCcUGCGGCGGGccGcGGGCCAAGGCuGGa -3'
miRNA:   3'- -CGaAUGCCGCUU--CuCCCGGUUCUG-CC- -5'
13981 3' -53.8 NC_003521.1 + 127323 0.76 0.638716
Target:  5'- cGCUcuCGGUGAcggccauGAGGGCCAGGcCGGg -3'
miRNA:   3'- -CGAauGCCGCUu------CUCCCGGUUCuGCC- -5'
13981 3' -53.8 NC_003521.1 + 166153 0.76 0.657654
Target:  5'- uGCUUGCGGUaGAGcgagcgcAGGGCCGAG-CGGc -3'
miRNA:   3'- -CGAAUGCCGcUUC-------UCCCGGUUCuGCC- -5'
13981 3' -53.8 NC_003521.1 + 98617 0.76 0.66859
Target:  5'- ---cAUGGCGAGGAGGGCgAGaGCGGc -3'
miRNA:   3'- cgaaUGCCGCUUCUCCCGgUUcUGCC- -5'
13981 3' -53.8 NC_003521.1 + 22167 0.76 0.678502
Target:  5'- ---gACGGUGGAGAGGGaCGAGGCGc -3'
miRNA:   3'- cgaaUGCCGCUUCUCCCgGUUCUGCc -5'
13981 3' -53.8 NC_003521.1 + 53356 0.76 0.678502
Target:  5'- gGCgcgGCGGCGGAG-GGGCCGacAGACc- -3'
miRNA:   3'- -CGaa-UGCCGCUUCuCCCGGU--UCUGcc -5'
13981 3' -53.8 NC_003521.1 + 85616 0.75 0.707989
Target:  5'- ---gGC-GCGAAGAGGGCCGAGA-GGu -3'
miRNA:   3'- cgaaUGcCGCUUCUCCCGGUUCUgCC- -5'
13981 3' -53.8 NC_003521.1 + 102928 0.75 0.717706
Target:  5'- --gUACGGUuu-GAGGGCCGAGGCGu -3'
miRNA:   3'- cgaAUGCCGcuuCUCCCGGUUCUGCc -5'
13981 3' -53.8 NC_003521.1 + 52192 0.75 0.721574
Target:  5'- cGCcgggGCGGCGAGcucaucagacaguacGGGGGCCGguaGGGCGGc -3'
miRNA:   3'- -CGaa--UGCCGCUU---------------CUCCCGGU---UCUGCC- -5'
13981 3' -53.8 NC_003521.1 + 70357 0.75 0.727354
Target:  5'- aGCUUGuCGGCGggGuAGaGCCGcAGGCGGc -3'
miRNA:   3'- -CGAAU-GCCGCuuC-UCcCGGU-UCUGCC- -5'
13981 3' -53.8 NC_003521.1 + 7723 0.75 0.727354
Target:  5'- uUUUugGGUGggGAGGGCgGcgcgagcggcggAGGCGGc -3'
miRNA:   3'- cGAAugCCGCuuCUCCCGgU------------UCUGCC- -5'
13981 3' -53.8 NC_003521.1 + 197276 0.74 0.736924
Target:  5'- cGCcgGCGGCGGggagcgGGAGGGCgGcucGACGGg -3'
miRNA:   3'- -CGaaUGCCGCU------UCUCCCGgUu--CUGCC- -5'
13981 3' -53.8 NC_003521.1 + 5656 0.74 0.736925
Target:  5'- ---gGCGGCGGaggguGGGGGGUCGAGAcaCGGg -3'
miRNA:   3'- cgaaUGCCGCU-----UCUCCCGGUUCU--GCC- -5'
13981 3' -53.8 NC_003521.1 + 164952 0.74 0.746408
Target:  5'- gGCUcGCGucgcCGGAGAGGGCCcucuuucauggAGGACGGa -3'
miRNA:   3'- -CGAaUGCc---GCUUCUCCCGG-----------UUCUGCC- -5'
13981 3' -53.8 NC_003521.1 + 120945 0.74 0.746408
Target:  5'- gGCUc-CGGCGAGGggcaGGGGgCGGGGCGGu -3'
miRNA:   3'- -CGAauGCCGCUUC----UCCCgGUUCUGCC- -5'
13981 3' -53.8 NC_003521.1 + 208999 0.74 0.755796
Target:  5'- cCUU-CGGCGccc-GGGCCGAGACGGc -3'
miRNA:   3'- cGAAuGCCGCuucuCCCGGUUCUGCC- -5'
13981 3' -53.8 NC_003521.1 + 23091 0.74 0.76508
Target:  5'- uGCguccgUGGcCGGgcGGGGGGCCGGGACGGc -3'
miRNA:   3'- -CGaau--GCC-GCU--UCUCCCGGUUCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.