miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13981 3' -53.8 NC_003521.1 + 86 0.71 0.905602
Target:  5'- cGCUUGCcgcgGGCGugcAGGGaGGCCGAaGCGGc -3'
miRNA:   3'- -CGAAUG----CCGCu--UCUC-CCGGUUcUGCC- -5'
13981 3' -53.8 NC_003521.1 + 4218 0.72 0.865441
Target:  5'- gGUUUGaagcCGGCcccggGAGGAGGaCCGAGACGGg -3'
miRNA:   3'- -CGAAU----GCCG-----CUUCUCCcGGUUCUGCC- -5'
13981 3' -53.8 NC_003521.1 + 4229 0.72 0.865441
Target:  5'- gGCcc-CGG-GAGGAGGaCCGAGACGGg -3'
miRNA:   3'- -CGaauGCCgCUUCUCCcGGUUCUGCC- -5'
13981 3' -53.8 NC_003521.1 + 5656 0.74 0.736925
Target:  5'- ---gGCGGCGGaggguGGGGGGUCGAGAcaCGGg -3'
miRNA:   3'- cgaaUGCCGCU-----UCUCCCGGUUCU--GCC- -5'
13981 3' -53.8 NC_003521.1 + 7723 0.75 0.727354
Target:  5'- uUUUugGGUGggGAGGGCgGcgcgagcggcggAGGCGGc -3'
miRNA:   3'- cGAAugCCGCuuCUCCCGgU------------UCUGCC- -5'
13981 3' -53.8 NC_003521.1 + 7972 0.71 0.886481
Target:  5'- ---cGCGGCcGGGAGGGuCCGcGGCGGc -3'
miRNA:   3'- cgaaUGCCGcUUCUCCC-GGUuCUGCC- -5'
13981 3' -53.8 NC_003521.1 + 9401 0.68 0.963259
Target:  5'- -----aGGCGAAGAGccaccagaagacgcuGGCgAAGACGGc -3'
miRNA:   3'- cgaaugCCGCUUCUC---------------CCGgUUCUGCC- -5'
13981 3' -53.8 NC_003521.1 + 12922 0.68 0.958446
Target:  5'- cGCUggUGGCGGGaccAGGGCCGGGA-GGa -3'
miRNA:   3'- -CGAauGCCGCUUc--UCCCGGUUCUgCC- -5'
13981 3' -53.8 NC_003521.1 + 13637 0.67 0.980775
Target:  5'- aCUggGCuGgGAAGGGcGGCgGAGGCGGg -3'
miRNA:   3'- cGAa-UGcCgCUUCUC-CCGgUUCUGCC- -5'
13981 3' -53.8 NC_003521.1 + 13871 0.67 0.975585
Target:  5'- uGCggGCGGCGccGccauggauuucgccGGGGGGCCcGGcGCGGa -3'
miRNA:   3'- -CGaaUGCCGC--U--------------UCUCCCGGuUC-UGCC- -5'
13981 3' -53.8 NC_003521.1 + 15224 0.67 0.976315
Target:  5'- gGCUgcagGCGGcCGAGcgcGAGGccgccgagcGCCAGGACGa -3'
miRNA:   3'- -CGAa---UGCC-GCUU---CUCC---------CGGUUCUGCc -5'
13981 3' -53.8 NC_003521.1 + 16644 0.68 0.97382
Target:  5'- ---cGCGGCGAccgcuuucGGGCCGAGAUGc -3'
miRNA:   3'- cgaaUGCCGCUucu-----CCCGGUUCUGCc -5'
13981 3' -53.8 NC_003521.1 + 18729 0.67 0.976315
Target:  5'- cGCUggcgGCGGCGAucguggcggcGGuGGcGCC--GACGGg -3'
miRNA:   3'- -CGAa---UGCCGCU----------UCuCC-CGGuuCUGCC- -5'
13981 3' -53.8 NC_003521.1 + 18781 0.66 0.990438
Target:  5'- cGCagGCGGU--GGAGGGCCAGcGCu- -3'
miRNA:   3'- -CGaaUGCCGcuUCUCCCGGUUcUGcc -5'
13981 3' -53.8 NC_003521.1 + 22167 0.76 0.678502
Target:  5'- ---gACGGUGGAGAGGGaCGAGGCGc -3'
miRNA:   3'- cgaaUGCCGCUUCUCCCgGUUCUGCc -5'
13981 3' -53.8 NC_003521.1 + 23091 0.74 0.76508
Target:  5'- uGCguccgUGGcCGGgcGGGGGGCCGGGACGGc -3'
miRNA:   3'- -CGaau--GCC-GCU--UCUCCCGGUUCUGCC- -5'
13981 3' -53.8 NC_003521.1 + 23201 0.66 0.991585
Target:  5'- ---cACGcCGAGGAGauggcGGCCGAGACGc -3'
miRNA:   3'- cgaaUGCcGCUUCUC-----CCGGUUCUGCc -5'
13981 3' -53.8 NC_003521.1 + 24425 0.69 0.937798
Target:  5'- aGCcagACGGCGcAG-GGGCC--GGCGGg -3'
miRNA:   3'- -CGaa-UGCCGCuUCuCCCGGuuCUGCC- -5'
13981 3' -53.8 NC_003521.1 + 28237 0.67 0.976315
Target:  5'- cGCUgACGGaggaaGAAGAcGGcGCCGAGA-GGa -3'
miRNA:   3'- -CGAaUGCCg----CUUCU-CC-CGGUUCUgCC- -5'
13981 3' -53.8 NC_003521.1 + 30386 0.68 0.965198
Target:  5'- aGgUUGCGGCGAcAGAaccugcguaGGCCcuGACGGg -3'
miRNA:   3'- -CgAAUGCCGCU-UCUc--------CCGGuuCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.