miRNA display CGI


Results 1 - 20 of 224 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13983 3' -64.1 NC_003521.1 + 139381 0.66 0.680116
Target:  5'- aGCGcCGUgCUCUugGcCCCGCgGuGGUCGa -3'
miRNA:   3'- -CGC-GCAgGAGGugC-GGGCGgU-CCGGU- -5'
13983 3' -64.1 NC_003521.1 + 105543 0.66 0.661408
Target:  5'- cGCGCccguguccucGUCCUCCucgucgucgGCGUCCGCC--GCCGu -3'
miRNA:   3'- -CGCG----------CAGGAGG---------UGCGGGCGGucCGGU- -5'
13983 3' -64.1 NC_003521.1 + 124179 0.66 0.642621
Target:  5'- -aGCG-CCUgUGCGCCUGCC-GGCUg -3'
miRNA:   3'- cgCGCaGGAgGUGCGGGCGGuCCGGu -5'
13983 3' -64.1 NC_003521.1 + 75240 0.66 0.661408
Target:  5'- uCGUGcCCUUCAUGCaCGCCgaggaGGGCCGg -3'
miRNA:   3'- cGCGCaGGAGGUGCGgGCGG-----UCCGGU- -5'
13983 3' -64.1 NC_003521.1 + 238882 0.66 0.661408
Target:  5'- cGCGgGUCCguuUCCGCGUCCugcggucugGCuCGGcGCCAu -3'
miRNA:   3'- -CGCgCAGG---AGGUGCGGG---------CG-GUC-CGGU- -5'
13983 3' -64.1 NC_003521.1 + 143153 0.66 0.652022
Target:  5'- uGgGCGUCCUCgACGauCCCGUgGGgGUCGg -3'
miRNA:   3'- -CgCGCAGGAGgUGC--GGGCGgUC-CGGU- -5'
13983 3' -64.1 NC_003521.1 + 69858 0.66 0.680116
Target:  5'- cGCGCcgaugaggCCgCCGCGCagcgccaCGcCCAGGCCAu -3'
miRNA:   3'- -CGCGca------GGaGGUGCGg------GC-GGUCCGGU- -5'
13983 3' -64.1 NC_003521.1 + 217721 0.66 0.661408
Target:  5'- uGUGcCGUCCcggCC-C-CCCGCCcGGCCAc -3'
miRNA:   3'- -CGC-GCAGGa--GGuGcGGGCGGuCCGGU- -5'
13983 3' -64.1 NC_003521.1 + 62011 0.66 0.670775
Target:  5'- uCGuCGaUCgaCC-CGCCCGCCGGGCa- -3'
miRNA:   3'- cGC-GC-AGgaGGuGCGGGCGGUCCGgu -5'
13983 3' -64.1 NC_003521.1 + 191148 0.66 0.661408
Target:  5'- -gGCGaCagcgCCGCGCUCGCCcGGCCc -3'
miRNA:   3'- cgCGCaGga--GGUGCGGGCGGuCCGGu -5'
13983 3' -64.1 NC_003521.1 + 129773 0.66 0.689422
Target:  5'- cCGCG-CCUgucCCGCGCacgugcgCGCCgAGGCCGa -3'
miRNA:   3'- cGCGCaGGA---GGUGCGg------GCGG-UCCGGU- -5'
13983 3' -64.1 NC_003521.1 + 131186 0.66 0.689422
Target:  5'- uCGCGU-CUCauguuCGCCCGCUacggcgagagGGGCCGg -3'
miRNA:   3'- cGCGCAgGAGgu---GCGGGCGG----------UCCGGU- -5'
13983 3' -64.1 NC_003521.1 + 142374 0.66 0.680116
Target:  5'- cCGCcUCCUCCAacguaGCCCaggagGCCGcGGCCc -3'
miRNA:   3'- cGCGcAGGAGGUg----CGGG-----CGGU-CCGGu -5'
13983 3' -64.1 NC_003521.1 + 129318 0.66 0.680116
Target:  5'- cGUGCG-CCgccgCCGCcaGCCCGCU-GGUCAg -3'
miRNA:   3'- -CGCGCaGGa---GGUG--CGGGCGGuCCGGU- -5'
13983 3' -64.1 NC_003521.1 + 201376 0.66 0.689422
Target:  5'- aCGCGgcCCUCgGCGCCgGgCUcGGCCGg -3'
miRNA:   3'- cGCGCa-GGAGgUGCGGgC-GGuCCGGU- -5'
13983 3' -64.1 NC_003521.1 + 172006 0.66 0.642621
Target:  5'- ---gGUCCUCgAUGgCCGCCucgauGGCCAu -3'
miRNA:   3'- cgcgCAGGAGgUGCgGGCGGu----CCGGU- -5'
13983 3' -64.1 NC_003521.1 + 27422 0.66 0.642621
Target:  5'- uGCGCacguaggCCUCCAgGCa-GcCCAGGCCGa -3'
miRNA:   3'- -CGCGca-----GGAGGUgCGggC-GGUCCGGU- -5'
13983 3' -64.1 NC_003521.1 + 196459 0.66 0.642621
Target:  5'- cGCGCGaaCCUCCGCuggcacucgGCCCGUuccgccuccuCAGGCUc -3'
miRNA:   3'- -CGCGCa-GGAGGUG---------CGGGCG----------GUCCGGu -5'
13983 3' -64.1 NC_003521.1 + 150447 0.66 0.680116
Target:  5'- cGCGCccgggGUCCUCCugGUCuggggcggcgagCGCCuggugGGGCCc -3'
miRNA:   3'- -CGCG-----CAGGAGGugCGG------------GCGG-----UCCGGu -5'
13983 3' -64.1 NC_003521.1 + 80152 0.66 0.689422
Target:  5'- uGCGCGUCCagC-CGCUgGa-GGGCCAg -3'
miRNA:   3'- -CGCGCAGGagGuGCGGgCggUCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.