miRNA display CGI


Results 1 - 20 of 224 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13983 3' -64.1 NC_003521.1 + 204042 1.09 0.001031
Target:  5'- gGCGCGUCCUCCACGCCCGCCAGGCCAc -3'
miRNA:   3'- -CGCGCAGGAGGUGCGGGCGGUCCGGU- -5'
13983 3' -64.1 NC_003521.1 + 191214 0.8 0.102718
Target:  5'- cCGUGUCCUCCGCGUCC-CCAGcGCCGg -3'
miRNA:   3'- cGCGCAGGAGGUGCGGGcGGUC-CGGU- -5'
13983 3' -64.1 NC_003521.1 + 226912 0.8 0.110174
Target:  5'- aGCGCGgCCUCCGCgGCCCccuccgcGCCGGGCCc -3'
miRNA:   3'- -CGCGCaGGAGGUG-CGGG-------CGGUCCGGu -5'
13983 3' -64.1 NC_003521.1 + 136744 0.8 0.113133
Target:  5'- cCGCGUCCUgCCGCGCCCGCUcgagcugcuGGCCu -3'
miRNA:   3'- cGCGCAGGA-GGUGCGGGCGGu--------CCGGu -5'
13983 3' -64.1 NC_003521.1 + 196275 0.79 0.118703
Target:  5'- aGgGCGUCCUCaugugaGCGCgUGCCGGGCCGc -3'
miRNA:   3'- -CgCGCAGGAGg-----UGCGgGCGGUCCGGU- -5'
13983 3' -64.1 NC_003521.1 + 202586 0.79 0.124528
Target:  5'- cCGCGUCUcgCCcCGCCCGCCgAGGCCGc -3'
miRNA:   3'- cGCGCAGGa-GGuGCGGGCGG-UCCGGU- -5'
13983 3' -64.1 NC_003521.1 + 2358 0.78 0.140267
Target:  5'- cCGCGUCUccgCCcCGCCCGCCgAGGCCGc -3'
miRNA:   3'- cGCGCAGGa--GGuGCGGGCGG-UCCGGU- -5'
13983 3' -64.1 NC_003521.1 + 205798 0.76 0.190019
Target:  5'- aGCGUGcCCaaCCGCGUCCGCCGGGCaCGa -3'
miRNA:   3'- -CGCGCaGGa-GGUGCGGGCGGUCCG-GU- -5'
13983 3' -64.1 NC_003521.1 + 95193 0.76 0.190019
Target:  5'- gGCGCGgaaCUCCACGCCCGgcaCCGGGUg- -3'
miRNA:   3'- -CGCGCag-GAGGUGCGGGC---GGUCCGgu -5'
13983 3' -64.1 NC_003521.1 + 87862 0.76 0.194428
Target:  5'- -gGUGUCCUCgCagGCGCUgGCCAGGCCGu -3'
miRNA:   3'- cgCGCAGGAG-G--UGCGGgCGGUCCGGU- -5'
13983 3' -64.1 NC_003521.1 + 142338 0.76 0.198928
Target:  5'- uGCGCGaggCCgccgCCACGgCCGCCGcGGCCGc -3'
miRNA:   3'- -CGCGCa--GGa---GGUGCgGGCGGU-CCGGU- -5'
13983 3' -64.1 NC_003521.1 + 91931 0.75 0.212972
Target:  5'- gGCGC-UCCUCgGCGUCgGCCAcGGCCGa -3'
miRNA:   3'- -CGCGcAGGAGgUGCGGgCGGU-CCGGU- -5'
13983 3' -64.1 NC_003521.1 + 135523 0.75 0.212972
Target:  5'- cGCgGCGUCC-CCACGCCCGCCAugaacGcGCUg -3'
miRNA:   3'- -CG-CGCAGGaGGUGCGGGCGGU-----C-CGGu -5'
13983 3' -64.1 NC_003521.1 + 203491 0.75 0.238269
Target:  5'- cGUGCGUCCUCCGCGaCCGCCc--CCAc -3'
miRNA:   3'- -CGCGCAGGAGGUGCgGGCGGuccGGU- -5'
13983 3' -64.1 NC_003521.1 + 118020 0.75 0.238269
Target:  5'- aGCGCGaUCuCUUCGcCGCCCGCCAGGgguCCGc -3'
miRNA:   3'- -CGCGC-AG-GAGGU-GCGGGCGGUCC---GGU- -5'
13983 3' -64.1 NC_003521.1 + 109470 0.75 0.238269
Target:  5'- gGCGCGUCUgggaaCAUGCgCGCCAGGCg- -3'
miRNA:   3'- -CGCGCAGGag---GUGCGgGCGGUCCGgu -5'
13983 3' -64.1 NC_003521.1 + 691 0.74 0.249072
Target:  5'- aGCGC--UUUCCGCGCCCGCCGGGaCGa -3'
miRNA:   3'- -CGCGcaGGAGGUGCGGGCGGUCCgGU- -5'
13983 3' -64.1 NC_003521.1 + 200918 0.74 0.249072
Target:  5'- aGCGC--UUUCCGCGCCCGCCGGGaCGa -3'
miRNA:   3'- -CGCGcaGGAGGUGCGGGCGGUCCgGU- -5'
13983 3' -64.1 NC_003521.1 + 154422 0.74 0.249072
Target:  5'- cGCGCGUCCcCCGCGUcgaCCGCU-GGCCc -3'
miRNA:   3'- -CGCGCAGGaGGUGCG---GGCGGuCCGGu -5'
13983 3' -64.1 NC_003521.1 + 197683 0.74 0.254623
Target:  5'- aGCGCGUgcaCCUCCACGCCCagcGCCgAGcGCUc -3'
miRNA:   3'- -CGCGCA---GGAGGUGCGGG---CGG-UC-CGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.