miRNA display CGI


Results 1 - 20 of 224 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13983 3' -64.1 NC_003521.1 + 162324 0.72 0.328609
Target:  5'- cGCGUGUCCggucggcccgUCCGagguaagucacguCGCgCGCCGGGCCGc -3'
miRNA:   3'- -CGCGCAGG----------AGGU-------------GCGgGCGGUCCGGU- -5'
13983 3' -64.1 NC_003521.1 + 148990 0.74 0.271887
Target:  5'- gGCGCGcaCCUUCACGCCCGuCCAGauCCAg -3'
miRNA:   3'- -CGCGCa-GGAGGUGCGGGC-GGUCc-GGU- -5'
13983 3' -64.1 NC_003521.1 + 228287 0.73 0.276049
Target:  5'- -gGCGUCCUCCacggcgaaguggaaACGCCgGCC-GGCCu -3'
miRNA:   3'- cgCGCAGGAGG--------------UGCGGgCGGuCCGGu -5'
13983 3' -64.1 NC_003521.1 + 127460 0.73 0.29008
Target:  5'- gGC-CGUUgUUgACGCCCGCCAGcGCCGa -3'
miRNA:   3'- -CGcGCAGgAGgUGCGGGCGGUC-CGGU- -5'
13983 3' -64.1 NC_003521.1 + 240046 0.73 0.295721
Target:  5'- gGCG-GUCCUCCgccgaugGCGCCUGCUuGGCCu -3'
miRNA:   3'- -CGCgCAGGAGG-------UGCGGGCGGuCCGGu -5'
13983 3' -64.1 NC_003521.1 + 125874 0.73 0.296353
Target:  5'- cCGCGUCCgugucguacgggUCCACGCCCagcaugcacgagGCCcGGCCGc -3'
miRNA:   3'- cGCGCAGG------------AGGUGCGGG------------CGGuCCGGU- -5'
13983 3' -64.1 NC_003521.1 + 26943 0.73 0.30273
Target:  5'- -aGCGagCUCCGCGCCCGgCGGGUa- -3'
miRNA:   3'- cgCGCagGAGGUGCGGGCgGUCCGgu -5'
13983 3' -64.1 NC_003521.1 + 42545 0.72 0.322495
Target:  5'- aGCG-GUCCUCCgcgACGCCCGgCuGGCUg -3'
miRNA:   3'- -CGCgCAGGAGG---UGCGGGCgGuCCGGu -5'
13983 3' -64.1 NC_003521.1 + 123100 0.72 0.322495
Target:  5'- cGCGCa-CCUCCAgacCGuCCuCGCCGGGCCGc -3'
miRNA:   3'- -CGCGcaGGAGGU---GC-GG-GCGGUCCGGU- -5'
13983 3' -64.1 NC_003521.1 + 200918 0.74 0.249072
Target:  5'- aGCGC--UUUCCGCGCCCGCCGGGaCGa -3'
miRNA:   3'- -CGCGcaGGAGGUGCGGGCGGUCCgGU- -5'
13983 3' -64.1 NC_003521.1 + 154422 0.74 0.249072
Target:  5'- cGCGCGUCCcCCGCGUcgaCCGCU-GGCCc -3'
miRNA:   3'- -CGCGCAGGaGGUGCG---GGCGGuCCGGu -5'
13983 3' -64.1 NC_003521.1 + 109470 0.75 0.238269
Target:  5'- gGCGCGUCUgggaaCAUGCgCGCCAGGCg- -3'
miRNA:   3'- -CGCGCAGGag---GUGCGgGCGGUCCGgu -5'
13983 3' -64.1 NC_003521.1 + 226912 0.8 0.110174
Target:  5'- aGCGCGgCCUCCGCgGCCCccuccgcGCCGGGCCc -3'
miRNA:   3'- -CGCGCaGGAGGUG-CGGG-------CGGUCCGGu -5'
13983 3' -64.1 NC_003521.1 + 136744 0.8 0.113133
Target:  5'- cCGCGUCCUgCCGCGCCCGCUcgagcugcuGGCCu -3'
miRNA:   3'- cGCGCAGGA-GGUGCGGGCGGu--------CCGGu -5'
13983 3' -64.1 NC_003521.1 + 202586 0.79 0.124528
Target:  5'- cCGCGUCUcgCCcCGCCCGCCgAGGCCGc -3'
miRNA:   3'- cGCGCAGGa-GGuGCGGGCGG-UCCGGU- -5'
13983 3' -64.1 NC_003521.1 + 87862 0.76 0.194428
Target:  5'- -gGUGUCCUCgCagGCGCUgGCCAGGCCGu -3'
miRNA:   3'- cgCGCAGGAG-G--UGCGGgCGGUCCGGU- -5'
13983 3' -64.1 NC_003521.1 + 142338 0.76 0.198928
Target:  5'- uGCGCGaggCCgccgCCACGgCCGCCGcGGCCGc -3'
miRNA:   3'- -CGCGCa--GGa---GGUGCgGGCGGU-CCGGU- -5'
13983 3' -64.1 NC_003521.1 + 135523 0.75 0.212972
Target:  5'- cGCgGCGUCC-CCACGCCCGCCAugaacGcGCUg -3'
miRNA:   3'- -CG-CGCAGGaGGUGCGGGCGGU-----C-CGGu -5'
13983 3' -64.1 NC_003521.1 + 118020 0.75 0.238269
Target:  5'- aGCGCGaUCuCUUCGcCGCCCGCCAGGgguCCGc -3'
miRNA:   3'- -CGCGC-AG-GAGGU-GCGGGCGGUCC---GGU- -5'
13983 3' -64.1 NC_003521.1 + 203491 0.75 0.238269
Target:  5'- cGUGCGUCCUCCGCGaCCGCCc--CCAc -3'
miRNA:   3'- -CGCGCAGGAGGUGCgGGCGGuccGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.