miRNA display CGI


Results 1 - 20 of 224 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13983 3' -64.1 NC_003521.1 + 302 0.67 0.633214
Target:  5'- uGUGCGUCCaCCggucugGCGUCC-CCAGGCg- -3'
miRNA:   3'- -CGCGCAGGaGG------UGCGGGcGGUCCGgu -5'
13983 3' -64.1 NC_003521.1 + 691 0.74 0.249072
Target:  5'- aGCGC--UUUCCGCGCCCGCCGGGaCGa -3'
miRNA:   3'- -CGCGcaGGAGGUGCGGGCGGUCCgGU- -5'
13983 3' -64.1 NC_003521.1 + 2358 0.78 0.140267
Target:  5'- cCGCGUCUccgCCcCGCCCGCCgAGGCCGc -3'
miRNA:   3'- cGCGCAGGa--GGuGCGGGCGG-UCCGGU- -5'
13983 3' -64.1 NC_003521.1 + 5801 0.66 0.652022
Target:  5'- cCG-GUCCguaaacCCGCGUCCGCgGaGGCCAg -3'
miRNA:   3'- cGCgCAGGa-----GGUGCGGGCGgU-CCGGU- -5'
13983 3' -64.1 NC_003521.1 + 11422 0.66 0.661408
Target:  5'- cCGUGUCC-CCGuaCCCGCCacccgugucuuuGGGCCAc -3'
miRNA:   3'- cGCGCAGGaGGUgcGGGCGG------------UCCGGU- -5'
13983 3' -64.1 NC_003521.1 + 13177 0.71 0.395167
Target:  5'- gGCGgGUCCUgaCCAgGCgugCCGCuCGGGCCGc -3'
miRNA:   3'- -CGCgCAGGA--GGUgCG---GGCG-GUCCGGU- -5'
13983 3' -64.1 NC_003521.1 + 14285 0.69 0.49511
Target:  5'- -aGCGUCauCUCCACGCCCuaCgugguguuucaGGGCCGc -3'
miRNA:   3'- cgCGCAG--GAGGUGCGGGcgG-----------UCCGGU- -5'
13983 3' -64.1 NC_003521.1 + 16398 0.66 0.680116
Target:  5'- cGCuCGcCCaCCACGCagCGCCuGGCCGg -3'
miRNA:   3'- -CGcGCaGGaGGUGCGg-GCGGuCCGGU- -5'
13983 3' -64.1 NC_003521.1 + 16801 0.66 0.642621
Target:  5'- -gGCGcCCgCCcCGaCCGCCGGGCCc -3'
miRNA:   3'- cgCGCaGGaGGuGCgGGCGGUCCGGu -5'
13983 3' -64.1 NC_003521.1 + 16876 0.7 0.435261
Target:  5'- cGUGCGUUCcCCGCGgCCGCCucgacccccucGGCCGc -3'
miRNA:   3'- -CGCGCAGGaGGUGCgGGCGGu----------CCGGU- -5'
13983 3' -64.1 NC_003521.1 + 18041 0.66 0.670775
Target:  5'- cGUGCagaaguUCCUCUGCGCCgaccccaccgaCGCCGuGGCCGu -3'
miRNA:   3'- -CGCGc-----AGGAGGUGCGG-----------GCGGU-CCGGU- -5'
13983 3' -64.1 NC_003521.1 + 18174 0.69 0.486321
Target:  5'- aGCGUGgaggCgCUgCGCGCCUGCC-GGCCc -3'
miRNA:   3'- -CGCGCa---G-GAgGUGCGGGCGGuCCGGu -5'
13983 3' -64.1 NC_003521.1 + 18996 0.67 0.636978
Target:  5'- cGCGCGacgagggagaCACGCCCGCCccGCCGa -3'
miRNA:   3'- -CGCGCaggag-----GUGCGGGCGGucCGGU- -5'
13983 3' -64.1 NC_003521.1 + 20768 0.69 0.485447
Target:  5'- gGUGCuGUCCuUCCugGCguuggcgCUGUCGGGCCAc -3'
miRNA:   3'- -CGCG-CAGG-AGGugCG-------GGCGGUCCGGU- -5'
13983 3' -64.1 NC_003521.1 + 23075 0.67 0.623806
Target:  5'- cCGCGUCUguggugUCUGCGUCCgugGCCGGGCgGg -3'
miRNA:   3'- cGCGCAGG------AGGUGCGGG---CGGUCCGgU- -5'
13983 3' -64.1 NC_003521.1 + 24706 0.67 0.586287
Target:  5'- cCGCGgCCUCCGCGCCgCGCUcaaCCAg -3'
miRNA:   3'- cGCGCaGGAGGUGCGG-GCGGuccGGU- -5'
13983 3' -64.1 NC_003521.1 + 25769 0.73 0.29008
Target:  5'- -aGCGUCCUaauCGCCUGCCuGGCCc -3'
miRNA:   3'- cgCGCAGGAgguGCGGGCGGuCCGGu -5'
13983 3' -64.1 NC_003521.1 + 26943 0.73 0.30273
Target:  5'- -aGCGagCUCCGCGCCCGgCGGGUa- -3'
miRNA:   3'- cgCGCagGAGGUGCGGGCgGUCCGgu -5'
13983 3' -64.1 NC_003521.1 + 27051 0.7 0.463829
Target:  5'- uGCGCGUCUacgcgcuggccaucuUCUACGUggCCGCCAccacGGCCu -3'
miRNA:   3'- -CGCGCAGG---------------AGGUGCG--GGCGGU----CCGGu -5'
13983 3' -64.1 NC_003521.1 + 27422 0.66 0.642621
Target:  5'- uGCGCacguaggCCUCCAgGCa-GcCCAGGCCGa -3'
miRNA:   3'- -CGCGca-----GGAGGUgCGggC-GGUCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.