Results 1 - 20 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13983 | 5' | -56.6 | NC_003521.1 | + | 151856 | 0.66 | 0.931735 |
Target: 5'- -cUGGGCGacgagacGCGAGAGGuucuGGcGGCGCUc -3' miRNA: 3'- gaACCUGU-------CGCUCUCCu---UC-CCGUGGc -5' |
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13983 | 5' | -56.6 | NC_003521.1 | + | 83698 | 0.66 | 0.954008 |
Target: 5'- -gUGGACGcGCGAGcGGGcguccaAGGGguCCa -3' miRNA: 3'- gaACCUGU-CGCUCuCCU------UCCCguGGc -5' |
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13983 | 5' | -56.6 | NC_003521.1 | + | 113838 | 0.66 | 0.954008 |
Target: 5'- --cGGGCAGCGGcAGc-GGGGCgGCCGg -3' miRNA: 3'- gaaCCUGUCGCUcUCcuUCCCG-UGGC- -5' |
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13983 | 5' | -56.6 | NC_003521.1 | + | 18168 | 0.66 | 0.937025 |
Target: 5'- -cUGGGCAGCGu--GGAGGcGCugCGc -3' miRNA: 3'- gaACCUGUCGCucuCCUUCcCGugGC- -5' |
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13983 | 5' | -56.6 | NC_003521.1 | + | 105414 | 0.66 | 0.954008 |
Target: 5'- --cGuGACGGCGAuGGGGAuGGGGCAa-- -3' miRNA: 3'- gaaC-CUGUCGCU-CUCCU-UCCCGUggc -5' |
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13983 | 5' | -56.6 | NC_003521.1 | + | 167902 | 0.66 | 0.954008 |
Target: 5'- gUUGuAgAGCGGcAGGuGGGGCGCCGc -3' miRNA: 3'- gAACcUgUCGCUcUCCuUCCCGUGGC- -5' |
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13983 | 5' | -56.6 | NC_003521.1 | + | 167750 | 0.66 | 0.9416 |
Target: 5'- -gUGGcCGGCG-GAGcuGAGGGuCACCGa -3' miRNA: 3'- gaACCuGUCGCuCUCc-UUCCC-GUGGC- -5' |
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13983 | 5' | -56.6 | NC_003521.1 | + | 19436 | 0.66 | 0.937025 |
Target: 5'- --cGGAgGGUGAGAaagGGggGaGGCGCgGc -3' miRNA: 3'- gaaCCUgUCGCUCU---CCuuC-CCGUGgC- -5' |
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13983 | 5' | -56.6 | NC_003521.1 | + | 187066 | 0.66 | 0.937025 |
Target: 5'- --aGGGugcCAGCGAGcGG-AGGGCGCgGu -3' miRNA: 3'- gaaCCU---GUCGCUCuCCuUCCCGUGgC- -5' |
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13983 | 5' | -56.6 | NC_003521.1 | + | 127822 | 0.66 | 0.937025 |
Target: 5'- --aGGcgcGCAGCucGuGGAAGGGCcCCGg -3' miRNA: 3'- gaaCC---UGUCGcuCuCCUUCCCGuGGC- -5' |
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13983 | 5' | -56.6 | NC_003521.1 | + | 35996 | 0.66 | 0.950089 |
Target: 5'- gCUUGGuCAGCGAcggcGAcGGAGGuGGCgGCCc -3' miRNA: 3'- -GAACCuGUCGCU----CU-CCUUC-CCG-UGGc -5' |
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13983 | 5' | -56.6 | NC_003521.1 | + | 235585 | 0.66 | 0.937025 |
Target: 5'- --gGGACGuGCGGGAGGAcgAGaGGCGgacUCGg -3' miRNA: 3'- gaaCCUGU-CGCUCUCCU--UC-CCGU---GGC- -5' |
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13983 | 5' | -56.6 | NC_003521.1 | + | 120626 | 0.66 | 0.932227 |
Target: 5'- uUUGG-CAGCGGGc---AGGGCACCc -3' miRNA: 3'- gAACCuGUCGCUCuccuUCCCGUGGc -5' |
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13983 | 5' | -56.6 | NC_003521.1 | + | 172349 | 0.66 | 0.9416 |
Target: 5'- -gUGGcACacgucgGGCGGGuGGGucacGGGCACCGu -3' miRNA: 3'- gaACC-UG------UCGCUCuCCUu---CCCGUGGC- -5' |
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13983 | 5' | -56.6 | NC_003521.1 | + | 180888 | 0.66 | 0.945954 |
Target: 5'- --cGGAgaagucCAGCGAGAGGuGGGaGC-CCa -3' miRNA: 3'- gaaCCU------GUCGCUCUCCuUCC-CGuGGc -5' |
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13983 | 5' | -56.6 | NC_003521.1 | + | 120944 | 0.66 | 0.937025 |
Target: 5'- --cGGcucCGGCGAGGGGcAGGGgGCgGg -3' miRNA: 3'- gaaCCu--GUCGCUCUCCuUCCCgUGgC- -5' |
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13983 | 5' | -56.6 | NC_003521.1 | + | 210096 | 0.66 | 0.950089 |
Target: 5'- --cGGACAGacuGAGAGGAguAGGGUGaggaCGu -3' miRNA: 3'- gaaCCUGUCg--CUCUCCU--UCCCGUg---GC- -5' |
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13983 | 5' | -56.6 | NC_003521.1 | + | 130026 | 0.66 | 0.945954 |
Target: 5'- -cUGGcuuuCAGCGucauGGAGGGGCACg- -3' miRNA: 3'- gaACCu---GUCGCucu-CCUUCCCGUGgc -5' |
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13983 | 5' | -56.6 | NC_003521.1 | + | 212161 | 0.66 | 0.954008 |
Target: 5'- --gGGAaccagaGGUGcGAGGuuAGGGGCACCa -3' miRNA: 3'- gaaCCUg-----UCGCuCUCC--UUCCCGUGGc -5' |
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13983 | 5' | -56.6 | NC_003521.1 | + | 167659 | 0.66 | 0.945954 |
Target: 5'- -gUGGACAG-GAGAGGAGugacgugcucGcGGUugCGg -3' miRNA: 3'- gaACCUGUCgCUCUCCUU----------C-CCGugGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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