miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13983 5' -56.6 NC_003521.1 + 240575 0.69 0.825381
Target:  5'- --cGGGgGGUGGGGGGGuguuuuuggcgggGGGGCACUa -3'
miRNA:   3'- gaaCCUgUCGCUCUCCU-------------UCCCGUGGc -5'
13983 5' -56.6 NC_003521.1 + 135803 0.7 0.774385
Target:  5'- --aGGAgCAGCGgcGGAGGGAGGcGCGgCGa -3'
miRNA:   3'- gaaCCU-GUCGC--UCUCCUUCC-CGUgGC- -5'
13983 5' -56.6 NC_003521.1 + 224013 0.7 0.774385
Target:  5'- --cGGcaGCGGCGGGcccggcggucGGGgcGGGCGCCGu -3'
miRNA:   3'- gaaCC--UGUCGCUC----------UCCuuCCCGUGGC- -5'
13983 5' -56.6 NC_003521.1 + 160496 0.7 0.800935
Target:  5'- --cGGACacagcagaccgcGGCGGGAGGAgGGGGCGgCa -3'
miRNA:   3'- gaaCCUG------------UCGCUCUCCU-UCCCGUgGc -5'
13983 5' -56.6 NC_003521.1 + 118706 0.7 0.80951
Target:  5'- --aGGGCaggcucaugGGCGAGGGGcgcGGCACCGg -3'
miRNA:   3'- gaaCCUG---------UCGCUCUCCuucCCGUGGC- -5'
13983 5' -56.6 NC_003521.1 + 664 0.69 0.817934
Target:  5'- --gGGAC-GCG-GAGGAGGGGgGCUa -3'
miRNA:   3'- gaaCCUGuCGCuCUCCUUCCCgUGGc -5'
13983 5' -56.6 NC_003521.1 + 91487 0.69 0.817934
Target:  5'- -aUGcGugGGUG-GGGGAuGGGCACCa -3'
miRNA:   3'- gaAC-CugUCGCuCUCCUuCCCGUGGc -5'
13983 5' -56.6 NC_003521.1 + 128478 0.69 0.817934
Target:  5'- -aUGGGCAGCGGcguGAGGcuGuGcGCGCCGg -3'
miRNA:   3'- gaACCUGUCGCU---CUCCuuC-C-CGUGGC- -5'
13983 5' -56.6 NC_003521.1 + 26 0.69 0.825381
Target:  5'- --cGGGgGGUGGGGGGGuguuuuuggcgggGGGGCACUa -3'
miRNA:   3'- gaaCCUgUCGCUCUCCU-------------UCCCGUGGc -5'
13983 5' -56.6 NC_003521.1 + 65079 0.71 0.765286
Target:  5'- -cUGGACaaggagaaccGGCGccaGGAGGAAGagcGGCGCCGa -3'
miRNA:   3'- gaACCUG----------UCGC---UCUCCUUC---CCGUGGC- -5'
13983 5' -56.6 NC_003521.1 + 131104 0.71 0.743952
Target:  5'- --cGGACGGCGGGgcggcgcggcugccGGGAAGGGaCAgCGc -3'
miRNA:   3'- gaaCCUGUCGCUC--------------UCCUUCCC-GUgGC- -5'
13983 5' -56.6 NC_003521.1 + 168494 0.71 0.737358
Target:  5'- -aUGGGCGGCGAGAcGGAGGcGGaggacggcgaCGCCa -3'
miRNA:   3'- gaACCUGUCGCUCU-CCUUC-CC----------GUGGc -5'
13983 5' -56.6 NC_003521.1 + 82800 0.77 0.43168
Target:  5'- -gUGGACGacgaagaagccGaCGAGAGG-AGGGCACCGg -3'
miRNA:   3'- gaACCUGU-----------C-GCUCUCCuUCCCGUGGC- -5'
13983 5' -56.6 NC_003521.1 + 46019 0.74 0.551464
Target:  5'- uCUUGGuCAGacgugGGGAGGAgugaGGGGCGCCa -3'
miRNA:   3'- -GAACCuGUCg----CUCUCCU----UCCCGUGGc -5'
13983 5' -56.6 NC_003521.1 + 91361 0.74 0.561167
Target:  5'- --aGGACGGUG-GGGGAGGGG-GCCGa -3'
miRNA:   3'- gaaCCUGUCGCuCUCCUUCCCgUGGC- -5'
13983 5' -56.6 NC_003521.1 + 44947 0.73 0.620148
Target:  5'- --aGGACGG--GGAGGAAGGGCGgCGa -3'
miRNA:   3'- gaaCCUGUCgcUCUCCUUCCCGUgGC- -5'
13983 5' -56.6 NC_003521.1 + 24236 0.72 0.659722
Target:  5'- gUUGGGCAGCGGGcGGucGGGCGgUa -3'
miRNA:   3'- gAACCUGUCGCUCuCCuuCCCGUgGc -5'
13983 5' -56.6 NC_003521.1 + 137453 0.72 0.669583
Target:  5'- -gUGGAgguaucgcgcacCGaCGAGuGGAAGGGCGCCGg -3'
miRNA:   3'- gaACCU------------GUcGCUCuCCUUCCCGUGGC- -5'
13983 5' -56.6 NC_003521.1 + 55453 0.72 0.698961
Target:  5'- -cUGGGCGGCGcgcuGGAAGaGGCACUGc -3'
miRNA:   3'- gaACCUGUCGCucu-CCUUC-CCGUGGC- -5'
13983 5' -56.6 NC_003521.1 + 6369 0.71 0.727867
Target:  5'- --gGGGcCGGuCGGGGucgcGGAGGGGCGCCGc -3'
miRNA:   3'- gaaCCU-GUC-GCUCU----CCUUCCCGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.