miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13983 5' -56.6 NC_003521.1 + 26 0.69 0.825381
Target:  5'- --cGGGgGGUGGGGGGGuguuuuuggcgggGGGGCACUa -3'
miRNA:   3'- gaaCCUgUCGCUCUCCU-------------UCCCGUGGc -5'
13983 5' -56.6 NC_003521.1 + 664 0.69 0.817934
Target:  5'- --gGGAC-GCG-GAGGAGGGGgGCUa -3'
miRNA:   3'- gaaCCUGuCGCuCUCCUUCCCgUGGc -5'
13983 5' -56.6 NC_003521.1 + 3962 0.69 0.857546
Target:  5'- ---cGAagaAGCG-GAGGAcccGGGGCACCGu -3'
miRNA:   3'- gaacCUg--UCGCuCUCCU---UCCCGUGGC- -5'
13983 5' -56.6 NC_003521.1 + 5661 0.68 0.872099
Target:  5'- --cGGAgGGUGGGGGGucgagacacGGGCGCCc -3'
miRNA:   3'- gaaCCUgUCGCUCUCCuu-------CCCGUGGc -5'
13983 5' -56.6 NC_003521.1 + 6369 0.71 0.727867
Target:  5'- --gGGGcCGGuCGGGGucgcGGAGGGGCGCCGc -3'
miRNA:   3'- gaaCCU-GUC-GCUCU----CCUUCCCGUGGC- -5'
13983 5' -56.6 NC_003521.1 + 7988 0.66 0.954008
Target:  5'- --cGcGGCGGCGGGGGaGGuaccGGGGCAgCGc -3'
miRNA:   3'- gaaC-CUGUCGCUCUC-CU----UCCCGUgGC- -5'
13983 5' -56.6 NC_003521.1 + 13620 0.69 0.829461
Target:  5'- --gGGGC-GCGAGgcuauaaacugggcuGGGAAGGGCGgCGg -3'
miRNA:   3'- gaaCCUGuCGCUC---------------UCCUUCCCGUgGC- -5'
13983 5' -56.6 NC_003521.1 + 17073 0.67 0.904889
Target:  5'- --aGGACgacgAGUGGGAGGAuuuGGGCuuCGa -3'
miRNA:   3'- gaaCCUG----UCGCUCUCCUu--CCCGugGC- -5'
13983 5' -56.6 NC_003521.1 + 17458 0.67 0.904889
Target:  5'- --cGcGGCAGCGcucGGAGGAGagacgacGGCACCGg -3'
miRNA:   3'- gaaC-CUGUCGC---UCUCCUUc------CCGUGGC- -5'
13983 5' -56.6 NC_003521.1 + 18168 0.66 0.937025
Target:  5'- -cUGGGCAGCGu--GGAGGcGCugCGc -3'
miRNA:   3'- gaACCUGUCGCucuCCUUCcCGugGC- -5'
13983 5' -56.6 NC_003521.1 + 18882 0.71 0.746765
Target:  5'- -cUGaGCAGCGAcGAGGAcGaGGCGCCGc -3'
miRNA:   3'- gaACcUGUCGCU-CUCCUuC-CCGUGGC- -5'
13983 5' -56.6 NC_003521.1 + 19082 0.7 0.774385
Target:  5'- -cUGGGCcGUGAgGAGGAGGGGgACgGg -3'
miRNA:   3'- gaACCUGuCGCU-CUCCUUCCCgUGgC- -5'
13983 5' -56.6 NC_003521.1 + 19436 0.66 0.937025
Target:  5'- --cGGAgGGUGAGAaagGGggGaGGCGCgGc -3'
miRNA:   3'- gaaCCUgUCGCUCU---CCuuC-CCGUGgC- -5'
13983 5' -56.6 NC_003521.1 + 22164 0.68 0.864921
Target:  5'- --gGaGACGGUgGAGAGGGAcGaGGCGCCGc -3'
miRNA:   3'- gaaC-CUGUCG-CUCUCCUU-C-CCGUGGC- -5'
13983 5' -56.6 NC_003521.1 + 24236 0.72 0.659722
Target:  5'- gUUGGGCAGCGGGcGGucGGGCGgUa -3'
miRNA:   3'- gAACCUGUCGCUCuCCuuCCCGUgGc -5'
13983 5' -56.6 NC_003521.1 + 28467 0.66 0.945954
Target:  5'- cCUUGGGCggugcaccAGCGGGuGGugauGGGCgugACCGu -3'
miRNA:   3'- -GAACCUG--------UCGCUCuCCuu--CCCG---UGGC- -5'
13983 5' -56.6 NC_003521.1 + 29985 0.67 0.921961
Target:  5'- -cUGGACGGaggGAGGGGAcGaGCGCCa -3'
miRNA:   3'- gaACCUGUCg--CUCUCCUuCcCGUGGc -5'
13983 5' -56.6 NC_003521.1 + 33864 0.67 0.916493
Target:  5'- --gGGAgAuaGAGAGGGAaGGCGCCa -3'
miRNA:   3'- gaaCCUgUcgCUCUCCUUcCCGUGGc -5'
13983 5' -56.6 NC_003521.1 + 35996 0.66 0.950089
Target:  5'- gCUUGGuCAGCGAcggcGAcGGAGGuGGCgGCCc -3'
miRNA:   3'- -GAACCuGUCGCU----CU-CCUUC-CCG-UGGc -5'
13983 5' -56.6 NC_003521.1 + 37370 0.67 0.904889
Target:  5'- -cUGGuCGGCGAcugcgguguucGAGGcggcGGGGGCGCCc -3'
miRNA:   3'- gaACCuGUCGCU-----------CUCC----UUCCCGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.