miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13983 5' -56.6 NC_003521.1 + 204076 1.08 0.004811
Target:  5'- cCUUGGACAGCGAGAGGAAGGGCACCGc -3'
miRNA:   3'- -GAACCUGUCGCUCUCCUUCCCGUGGC- -5'
13983 5' -56.6 NC_003521.1 + 155400 0.81 0.262348
Target:  5'- --aGGcCGGCGGGGGGcuGGGCACCGg -3'
miRNA:   3'- gaaCCuGUCGCUCUCCuuCCCGUGGC- -5'
13983 5' -56.6 NC_003521.1 + 215387 0.77 0.397941
Target:  5'- --aGGACGGCc--AGGAAGGGCACCa -3'
miRNA:   3'- gaaCCUGUCGcucUCCUUCCCGUGGc -5'
13983 5' -56.6 NC_003521.1 + 82800 0.77 0.43168
Target:  5'- -gUGGACGacgaagaagccGaCGAGAGG-AGGGCACCGg -3'
miRNA:   3'- gaACCUGU-----------C-GCUCUCCuUCCCGUGGC- -5'
13983 5' -56.6 NC_003521.1 + 123068 0.75 0.522684
Target:  5'- --gGGACGGCGgcggcGGAGGAgcuccgucguaAGGGUACCGc -3'
miRNA:   3'- gaaCCUGUCGC-----UCUCCU-----------UCCCGUGGC- -5'
13983 5' -56.6 NC_003521.1 + 123533 0.74 0.551464
Target:  5'- --gGGGCAGCGuGAGGGGagccGGCACCa -3'
miRNA:   3'- gaaCCUGUCGCuCUCCUUc---CCGUGGc -5'
13983 5' -56.6 NC_003521.1 + 46019 0.74 0.551464
Target:  5'- uCUUGGuCAGacgugGGGAGGAgugaGGGGCGCCa -3'
miRNA:   3'- -GAACCuGUCg----CUCUCCU----UCCCGUGGc -5'
13983 5' -56.6 NC_003521.1 + 239102 0.74 0.561167
Target:  5'- --aGGAacGCGAGGGGAGGGG-ACCGg -3'
miRNA:   3'- gaaCCUguCGCUCUCCUUCCCgUGGC- -5'
13983 5' -56.6 NC_003521.1 + 91361 0.74 0.561167
Target:  5'- --aGGACGGUG-GGGGAGGGG-GCCGa -3'
miRNA:   3'- gaaCCUGUCGCuCUCCUUCCCgUGGC- -5'
13983 5' -56.6 NC_003521.1 + 198945 0.74 0.570916
Target:  5'- -aUGaGGCAGUG-GAGGuuGGGCACCa -3'
miRNA:   3'- gaAC-CUGUCGCuCUCCuuCCCGUGGc -5'
13983 5' -56.6 NC_003521.1 + 204702 0.74 0.58758
Target:  5'- --aGGGCAGCGAGgugaccaccacggcGGGGAGGGUGgCGa -3'
miRNA:   3'- gaaCCUGUCGCUC--------------UCCUUCCCGUgGC- -5'
13983 5' -56.6 NC_003521.1 + 44947 0.73 0.620148
Target:  5'- --aGGACGG--GGAGGAAGGGCGgCGa -3'
miRNA:   3'- gaaCCUGUCgcUCUCCUUCCCGUgGC- -5'
13983 5' -56.6 NC_003521.1 + 24236 0.72 0.659722
Target:  5'- gUUGGGCAGCGGGcGGucGGGCGgUa -3'
miRNA:   3'- gAACCUGUCGCUCuCCuuCCCGUgGc -5'
13983 5' -56.6 NC_003521.1 + 137453 0.72 0.669583
Target:  5'- -gUGGAgguaucgcgcacCGaCGAGuGGAAGGGCGCCGg -3'
miRNA:   3'- gaACCU------------GUcGCUCuCCUUCCCGUGGC- -5'
13983 5' -56.6 NC_003521.1 + 53166 0.72 0.679415
Target:  5'- --gGGACGGCGGcGAGGAGGucGGCgacGCCGu -3'
miRNA:   3'- gaaCCUGUCGCU-CUCCUUC--CCG---UGGC- -5'
13983 5' -56.6 NC_003521.1 + 90882 0.72 0.68921
Target:  5'- --gGGACGGgGAGGGGGacgacgaggAGGGCGCg- -3'
miRNA:   3'- gaaCCUGUCgCUCUCCU---------UCCCGUGgc -5'
13983 5' -56.6 NC_003521.1 + 90967 0.72 0.68921
Target:  5'- --gGuGugGGCGGGAGGAGGcGGCgaacGCCGa -3'
miRNA:   3'- gaaC-CugUCGCUCUCCUUC-CCG----UGGC- -5'
13983 5' -56.6 NC_003521.1 + 55453 0.72 0.698961
Target:  5'- -cUGGGCGGCGcgcuGGAAGaGGCACUGc -3'
miRNA:   3'- gaACCUGUCGCucu-CCUUC-CCGUGGC- -5'
13983 5' -56.6 NC_003521.1 + 148631 0.72 0.698961
Target:  5'- --gGGGCgGGgGAGGGGAggccAGGGCAUCGc -3'
miRNA:   3'- gaaCCUG-UCgCUCUCCU----UCCCGUGGC- -5'
13983 5' -56.6 NC_003521.1 + 184164 0.71 0.718298
Target:  5'- -cUGGuGC-GCGAGcGGGAGGuGCACCGg -3'
miRNA:   3'- gaACC-UGuCGCUCuCCUUCC-CGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.