Results 1 - 20 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13985 | 3' | -51.2 | NC_003521.1 | + | 192999 | 0.66 | 0.996567 |
Target: 5'- cUGGACUGCAAaaccCCGUa-CUGGAACUg -3' miRNA: 3'- aAUCUGGCGUU----GGCAgaGACUUUGGg -5' |
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13985 | 3' | -51.2 | NC_003521.1 | + | 235036 | 0.66 | 0.998537 |
Target: 5'- -gAGGCCGUAcuCC-UCUCaUGAGGCCg -3' miRNA: 3'- aaUCUGGCGUu-GGcAGAG-ACUUUGGg -5' |
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13985 | 3' | -51.2 | NC_003521.1 | + | 73726 | 0.66 | 0.996567 |
Target: 5'- -cGGGCCGCGACCG-CUUcgUGcAGCUg -3' miRNA: 3'- aaUCUGGCGUUGGCaGAG--ACuUUGGg -5' |
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13985 | 3' | -51.2 | NC_003521.1 | + | 88148 | 0.66 | 0.996567 |
Target: 5'- -aAGACCG-AAgCGaagCUGAAGCCCa -3' miRNA: 3'- aaUCUGGCgUUgGCagaGACUUUGGG- -5' |
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13985 | 3' | -51.2 | NC_003521.1 | + | 148164 | 0.66 | 0.996567 |
Target: 5'- -gAGGCUGCucGACCGgggggaUGGGACCCu -3' miRNA: 3'- aaUCUGGCG--UUGGCagag--ACUUUGGG- -5' |
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13985 | 3' | -51.2 | NC_003521.1 | + | 109603 | 0.66 | 0.996567 |
Target: 5'- ----gUCGCGacGCUGUCUCUGGcgccGGCCCc -3' miRNA: 3'- aaucuGGCGU--UGGCAGAGACU----UUGGG- -5' |
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13985 | 3' | -51.2 | NC_003521.1 | + | 221773 | 0.66 | 0.997078 |
Target: 5'- ---cGCCGCGccGCCGUC-CUcGAAGCuCCa -3' miRNA: 3'- aaucUGGCGU--UGGCAGaGA-CUUUG-GG- -5' |
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13985 | 3' | -51.2 | NC_003521.1 | + | 102450 | 0.66 | 0.996512 |
Target: 5'- -cAGGCCGCGgcagaucucgaagACCGUgUgCUuagaGAGGCCCg -3' miRNA: 3'- aaUCUGGCGU-------------UGGCAgA-GA----CUUUGGG- -5' |
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13985 | 3' | -51.2 | NC_003521.1 | + | 38074 | 0.66 | 0.996567 |
Target: 5'- -gGGGuuGUgguGGCCGUCgCUGGcaaGACCCg -3' miRNA: 3'- aaUCUggCG---UUGGCAGaGACU---UUGGG- -5' |
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13985 | 3' | -51.2 | NC_003521.1 | + | 107630 | 0.66 | 0.996567 |
Target: 5'- --cGACCGCggUCGUCccgaUCgccGAGGCCg -3' miRNA: 3'- aauCUGGCGuuGGCAG----AGa--CUUUGGg -5' |
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13985 | 3' | -51.2 | NC_003521.1 | + | 150267 | 0.66 | 0.998537 |
Target: 5'- ---cACCGCGGCCGgccUCUCgUGGGugCUg -3' miRNA: 3'- aaucUGGCGUUGGC---AGAG-ACUUugGG- -5' |
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13985 | 3' | -51.2 | NC_003521.1 | + | 174053 | 0.66 | 0.997078 |
Target: 5'- gUGGGCUGCGAUCGccucguccUCaUCUGAcuccucagcaauGGCCCg -3' miRNA: 3'- aAUCUGGCGUUGGC--------AG-AGACU------------UUGGG- -5' |
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13985 | 3' | -51.2 | NC_003521.1 | + | 116775 | 0.66 | 0.996932 |
Target: 5'- gUGGGCCGCcgccgcggcacgcuGGCCGUCUacgGccgcGACCCc -3' miRNA: 3'- aAUCUGGCG--------------UUGGCAGAga-Cu---UUGGG- -5' |
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13985 | 3' | -51.2 | NC_003521.1 | + | 156993 | 0.66 | 0.996882 |
Target: 5'- -gAGAUCGCGACgGUCUCcuccguacuuuauUGAGcaggaaaaaaaaacACCCc -3' miRNA: 3'- aaUCUGGCGUUGgCAGAG-------------ACUU--------------UGGG- -5' |
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13985 | 3' | -51.2 | NC_003521.1 | + | 136145 | 0.66 | 0.998248 |
Target: 5'- gUGGcgcGCCGCcACCacCUgCUGGAGCCCa -3' miRNA: 3'- aAUC---UGGCGuUGGcaGA-GACUUUGGG- -5' |
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13985 | 3' | -51.2 | NC_003521.1 | + | 47507 | 0.66 | 0.998537 |
Target: 5'- -cGGACCGCGaugcaGCCGUagCUGAGcagcguguCCCg -3' miRNA: 3'- aaUCUGGCGU-----UGGCAgaGACUUu-------GGG- -5' |
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13985 | 3' | -51.2 | NC_003521.1 | + | 137887 | 0.66 | 0.997524 |
Target: 5'- cUGGACCGCGA-CGcCUCg---GCCCu -3' miRNA: 3'- aAUCUGGCGUUgGCaGAGacuuUGGG- -5' |
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13985 | 3' | -51.2 | NC_003521.1 | + | 148913 | 0.66 | 0.996567 |
Target: 5'- ---cGCCGCcGCCGUC-CUG-GAUCCg -3' miRNA: 3'- aaucUGGCGuUGGCAGaGACuUUGGG- -5' |
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13985 | 3' | -51.2 | NC_003521.1 | + | 61778 | 0.66 | 0.998537 |
Target: 5'- -gGGACCGCcGCCGgCUCcggcgUGGAugCg -3' miRNA: 3'- aaUCUGGCGuUGGCaGAG-----ACUUugGg -5' |
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13985 | 3' | -51.2 | NC_003521.1 | + | 114106 | 0.66 | 0.998248 |
Target: 5'- --cGACCGC-GCCGcCUCgGAucuGCUCa -3' miRNA: 3'- aauCUGGCGuUGGCaGAGaCUu--UGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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