miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13985 3' -51.2 NC_003521.1 + 202661 1.11 0.009226
Target:  5'- aUUAGACCGCAACCGUCUCUGAAACCCa -3'
miRNA:   3'- -AAUCUGGCGUUGGCAGAGACUUUGGG- -5'
13985 3' -51.2 NC_003521.1 + 78245 0.77 0.723357
Target:  5'- ---cACCGCAGCCGgcagagCgCUGAAGCCCg -3'
miRNA:   3'- aaucUGGCGUUGGCa-----GaGACUUUGGG- -5'
13985 3' -51.2 NC_003521.1 + 13898 0.77 0.733277
Target:  5'- --cGACCGUAGCgGUCUCgacGAGACCg -3'
miRNA:   3'- aauCUGGCGUUGgCAGAGa--CUUUGGg -5'
13985 3' -51.2 NC_003521.1 + 189951 0.77 0.733277
Target:  5'- -cGGGCCGCcgAGCCGUucCUCaGGGACCCg -3'
miRNA:   3'- aaUCUGGCG--UUGGCA--GAGaCUUUGGG- -5'
13985 3' -51.2 NC_003521.1 + 215040 0.76 0.752841
Target:  5'- gUGGGCUGCAGCCG-Cg-UGGAGCCCc -3'
miRNA:   3'- aAUCUGGCGUUGGCaGagACUUUGGG- -5'
13985 3' -51.2 NC_003521.1 + 53988 0.76 0.781354
Target:  5'- cUGGGCCGCcauucgcagGACCGUCagaUCUGGucGCCCa -3'
miRNA:   3'- aAUCUGGCG---------UUGGCAG---AGACUu-UGGG- -5'
13985 3' -51.2 NC_003521.1 + 3818 0.74 0.858634
Target:  5'- --uGAUCGCAACCaGUCUCUGAGuucauggaaaGCUCu -3'
miRNA:   3'- aauCUGGCGUUGG-CAGAGACUU----------UGGG- -5'
13985 3' -51.2 NC_003521.1 + 185771 0.74 0.865524
Target:  5'- -gGGGCCGCGAUggagcgcaagacgCGUCUCUcGGAGCCg -3'
miRNA:   3'- aaUCUGGCGUUG-------------GCAGAGA-CUUUGGg -5'
13985 3' -51.2 NC_003521.1 + 234463 0.74 0.87371
Target:  5'- --cGACCcCGACCGgcccCUCUGGGAUCCg -3'
miRNA:   3'- aauCUGGcGUUGGCa---GAGACUUUGGG- -5'
13985 3' -51.2 NC_003521.1 + 149133 0.73 0.894668
Target:  5'- -cAGACCGCAGCaCGcC-CaGGAGCCCg -3'
miRNA:   3'- aaUCUGGCGUUG-GCaGaGaCUUUGGG- -5'
13985 3' -51.2 NC_003521.1 + 27187 0.73 0.901194
Target:  5'- -cAGAacaCGUAGCCGUCUUcgGAGACCa -3'
miRNA:   3'- aaUCUg--GCGUUGGCAGAGa-CUUUGGg -5'
13985 3' -51.2 NC_003521.1 + 207713 0.73 0.901194
Target:  5'- -aAGGcCCGCuacGCCGUCaucggcuggCUGGAGCCCg -3'
miRNA:   3'- aaUCU-GGCGu--UGGCAGa--------GACUUUGGG- -5'
13985 3' -51.2 NC_003521.1 + 204817 0.73 0.901194
Target:  5'- -gGGGCCGCcaccuccgucGCCGUCgCUGAccaAGCCCg -3'
miRNA:   3'- aaUCUGGCGu---------UGGCAGaGACU---UUGGG- -5'
13985 3' -51.2 NC_003521.1 + 126384 0.72 0.919346
Target:  5'- -cGGugCGCAcgGCCGUCagggcGAAGCCCg -3'
miRNA:   3'- aaUCugGCGU--UGGCAGaga--CUUUGGG- -5'
13985 3' -51.2 NC_003521.1 + 48653 0.72 0.919346
Target:  5'- --uGGCCGCGACCGgcgCUGAcACCg -3'
miRNA:   3'- aauCUGGCGUUGGCagaGACUuUGGg -5'
13985 3' -51.2 NC_003521.1 + 108199 0.72 0.924915
Target:  5'- gUGGcGCCGCcGCCGagUCUGGAAgCCg -3'
miRNA:   3'- aAUC-UGGCGuUGGCagAGACUUUgGG- -5'
13985 3' -51.2 NC_003521.1 + 85507 0.72 0.929195
Target:  5'- -gGGAcCCGCggUCGUCUCacccaggacgccGAAGCCCa -3'
miRNA:   3'- aaUCU-GGCGuuGGCAGAGa-----------CUUUGGG- -5'
13985 3' -51.2 NC_003521.1 + 223113 0.72 0.935325
Target:  5'- -gGGAUgGCGGCCGUCUCgcgcagcaccaGGAGCCa -3'
miRNA:   3'- aaUCUGgCGUUGGCAGAGa----------CUUUGGg -5'
13985 3' -51.2 NC_003521.1 + 219734 0.71 0.940167
Target:  5'- -gGGACCGC-GCCGUCgc-GGGACCa -3'
miRNA:   3'- aaUCUGGCGuUGGCAGagaCUUUGGg -5'
13985 3' -51.2 NC_003521.1 + 215576 0.71 0.944769
Target:  5'- -gGGACCGC-GCCGUCaaccgggCUcGGAGCCUg -3'
miRNA:   3'- aaUCUGGCGuUGGCAGa------GA-CUUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.