miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13985 3' -51.2 NC_003521.1 + 3652 0.71 0.953261
Target:  5'- --cGGCCGCcGCCGUCUgccucggcggCcGGGACCCu -3'
miRNA:   3'- aauCUGGCGuUGGCAGA----------GaCUUUGGG- -5'
13985 3' -51.2 NC_003521.1 + 3818 0.74 0.858634
Target:  5'- --uGAUCGCAACCaGUCUCUGAGuucauggaaaGCUCu -3'
miRNA:   3'- aauCUGGCGUUGG-CAGAGACUU----------UGGG- -5'
13985 3' -51.2 NC_003521.1 + 5834 0.68 0.987837
Target:  5'- -gGGACCGCuACCG---CUGGGACCg -3'
miRNA:   3'- aaUCUGGCGuUGGCagaGACUUUGGg -5'
13985 3' -51.2 NC_003521.1 + 7393 0.67 0.992791
Target:  5'- -gGGACCGCGucgagGCCGUC---GGAGCCa -3'
miRNA:   3'- aaUCUGGCGU-----UGGCAGagaCUUUGGg -5'
13985 3' -51.2 NC_003521.1 + 8093 0.67 0.992791
Target:  5'- -gGGAUCGCAGCgG-CUCgGAGucgucuGCCCa -3'
miRNA:   3'- aaUCUGGCGUUGgCaGAGaCUU------UGGG- -5'
13985 3' -51.2 NC_003521.1 + 10112 0.67 0.994575
Target:  5'- -gAGGCCuuuuuGCuaucuuugAGCCGUCUCUGAAAgUCu -3'
miRNA:   3'- aaUCUGG-----CG--------UUGGCAGAGACUUUgGG- -5'
13985 3' -51.2 NC_003521.1 + 13898 0.77 0.733277
Target:  5'- --cGACCGUAGCgGUCUCgacGAGACCg -3'
miRNA:   3'- aauCUGGCGUUGgCAGAGa--CUUUGGg -5'
13985 3' -51.2 NC_003521.1 + 13944 0.7 0.9675
Target:  5'- gUGGugcccCCGCAGCUGcCcucgCUGGAGCCCu -3'
miRNA:   3'- aAUCu----GGCGUUGGCaGa---GACUUUGGG- -5'
13985 3' -51.2 NC_003521.1 + 17476 0.69 0.984533
Target:  5'- -aAGGCCGCcGCCGaggC-CUGggGCaCCu -3'
miRNA:   3'- aaUCUGGCGuUGGCa--GaGACuuUG-GG- -5'
13985 3' -51.2 NC_003521.1 + 22945 0.68 0.99105
Target:  5'- gUAGACCGCuagauggcucggguGCaCGUCgugcugCUGggGCUCu -3'
miRNA:   3'- aAUCUGGCGu-------------UG-GCAGa-----GACuuUGGG- -5'
13985 3' -51.2 NC_003521.1 + 27187 0.73 0.901194
Target:  5'- -cAGAacaCGUAGCCGUCUUcgGAGACCa -3'
miRNA:   3'- aaUCUg--GCGUUGGCAGAGa-CUUUGGg -5'
13985 3' -51.2 NC_003521.1 + 27916 0.69 0.975683
Target:  5'- -aAGACCGC-GCCGUC-CUcGAguccaccGACCCc -3'
miRNA:   3'- aaUCUGGCGuUGGCAGaGA-CU-------UUGGG- -5'
13985 3' -51.2 NC_003521.1 + 28918 0.68 0.986261
Target:  5'- -gAGGCUGgGACUG-CUCUGGAucACCUg -3'
miRNA:   3'- aaUCUGGCgUUGGCaGAGACUU--UGGG- -5'
13985 3' -51.2 NC_003521.1 + 29463 0.67 0.992791
Target:  5'- --uGAuCCGCGACCGgCUgCUGcgGGACCCc -3'
miRNA:   3'- aauCU-GGCGUUGGCaGA-GAC--UUUGGG- -5'
13985 3' -51.2 NC_003521.1 + 29508 0.68 0.98927
Target:  5'- -gGGACCGCcuguuGACCcgcgaUCUCUGucuACCCc -3'
miRNA:   3'- aaUCUGGCG-----UUGGc----AGAGACuu-UGGG- -5'
13985 3' -51.2 NC_003521.1 + 29561 0.7 0.964272
Target:  5'- aUAGGCCGUGGCUca-UCUGGGACCa -3'
miRNA:   3'- aAUCUGGCGUUGGcagAGACUUUGGg -5'
13985 3' -51.2 NC_003521.1 + 37453 0.67 0.995984
Target:  5'- --cGACCGCGGCgGUUUCUgcgGAGGCg- -3'
miRNA:   3'- aauCUGGCGUUGgCAGAGA---CUUUGgg -5'
13985 3' -51.2 NC_003521.1 + 38074 0.66 0.996567
Target:  5'- -gGGGuuGUgguGGCCGUCgCUGGcaaGACCCg -3'
miRNA:   3'- aaUCUggCG---UUGGCAGaGACU---UUGGG- -5'
13985 3' -51.2 NC_003521.1 + 39629 0.67 0.995984
Target:  5'- -cAGACCGcCGGCC-UCUCguugcGCCCa -3'
miRNA:   3'- aaUCUGGC-GUUGGcAGAGacuu-UGGG- -5'
13985 3' -51.2 NC_003521.1 + 43643 0.71 0.953261
Target:  5'- -gGGACCGCcACCGcCUCc--AGCCCu -3'
miRNA:   3'- aaUCUGGCGuUGGCaGAGacuUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.