miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13985 3' -51.2 NC_003521.1 + 62812 0.7 0.973325
Target:  5'- --cGACCGUGGCCGcCUCcGuccuACCCg -3'
miRNA:   3'- aauCUGGCGUUGGCaGAGaCuu--UGGG- -5'
13985 3' -51.2 NC_003521.1 + 204386 0.71 0.957158
Target:  5'- --cGAgCGCAACuCGUCUCcGcgGCCCu -3'
miRNA:   3'- aauCUgGCGUUG-GCAGAGaCuuUGGG- -5'
13985 3' -51.2 NC_003521.1 + 188160 0.7 0.960827
Target:  5'- -cGGuGCCGCugcuGCCGcUCUCUGAAGCgugCCg -3'
miRNA:   3'- aaUC-UGGCGu---UGGC-AGAGACUUUG---GG- -5'
13985 3' -51.2 NC_003521.1 + 55988 0.7 0.964272
Target:  5'- -gGGGCCGCAGCCGguccacggcguUCUCc---ACCCa -3'
miRNA:   3'- aaUCUGGCGUUGGC-----------AGAGacuuUGGG- -5'
13985 3' -51.2 NC_003521.1 + 73655 0.7 0.964272
Target:  5'- ---cGCCGCGGCCGcCUCcaaGAcGCCCg -3'
miRNA:   3'- aaucUGGCGUUGGCaGAGa--CUuUGGG- -5'
13985 3' -51.2 NC_003521.1 + 164634 0.7 0.964272
Target:  5'- ---cACCGCGACCGcCUCcc-GACCCg -3'
miRNA:   3'- aaucUGGCGUUGGCaGAGacuUUGGG- -5'
13985 3' -51.2 NC_003521.1 + 162860 0.7 0.9675
Target:  5'- -gAGcCCGCGGCCGgCUCcaAGACCCa -3'
miRNA:   3'- aaUCuGGCGUUGGCaGAGacUUUGGG- -5'
13985 3' -51.2 NC_003521.1 + 233395 0.7 0.970515
Target:  5'- -gAGcuGCCGCuGCCGUCUCggcuccuGGCCCc -3'
miRNA:   3'- aaUC--UGGCGuUGGCAGAGacu----UUGGG- -5'
13985 3' -51.2 NC_003521.1 + 69502 0.7 0.970515
Target:  5'- gUAGACgGCGcagGCCG-CgUUGAGGCCCa -3'
miRNA:   3'- aAUCUGgCGU---UGGCaGaGACUUUGGG- -5'
13985 3' -51.2 NC_003521.1 + 3652 0.71 0.953261
Target:  5'- --cGGCCGCcGCCGUCUgccucggcggCcGGGACCCu -3'
miRNA:   3'- aauCUGGCGuUGGCAGA----------GaCUUUGGG- -5'
13985 3' -51.2 NC_003521.1 + 128647 0.71 0.949133
Target:  5'- --uGGCCgGCGccgacACCGUCUCcuugcugaUGAGGCCCg -3'
miRNA:   3'- aauCUGG-CGU-----UGGCAGAG--------ACUUUGGG- -5'
13985 3' -51.2 NC_003521.1 + 86810 0.71 0.949133
Target:  5'- ---uACCGCGACCGUagagCUGAAGUCCa -3'
miRNA:   3'- aaucUGGCGUUGGCAga--GACUUUGGG- -5'
13985 3' -51.2 NC_003521.1 + 189951 0.77 0.733277
Target:  5'- -cGGGCCGCcgAGCCGUucCUCaGGGACCCg -3'
miRNA:   3'- aaUCUGGCG--UUGGCA--GAGaCUUUGGG- -5'
13985 3' -51.2 NC_003521.1 + 27187 0.73 0.901194
Target:  5'- -cAGAacaCGUAGCCGUCUUcgGAGACCa -3'
miRNA:   3'- aaUCUg--GCGUUGGCAGAGa-CUUUGGg -5'
13985 3' -51.2 NC_003521.1 + 126384 0.72 0.919346
Target:  5'- -cGGugCGCAcgGCCGUCagggcGAAGCCCg -3'
miRNA:   3'- aaUCugGCGU--UGGCAGaga--CUUUGGG- -5'
13985 3' -51.2 NC_003521.1 + 85507 0.72 0.929195
Target:  5'- -gGGAcCCGCggUCGUCUCacccaggacgccGAAGCCCa -3'
miRNA:   3'- aaUCU-GGCGuuGGCAGAGa-----------CUUUGGG- -5'
13985 3' -51.2 NC_003521.1 + 223113 0.72 0.935325
Target:  5'- -gGGAUgGCGGCCGUCUCgcgcagcaccaGGAGCCa -3'
miRNA:   3'- aaUCUGgCGUUGGCAGAGa----------CUUUGGg -5'
13985 3' -51.2 NC_003521.1 + 219734 0.71 0.940167
Target:  5'- -gGGACCGC-GCCGUCgc-GGGACCa -3'
miRNA:   3'- aaUCUGGCGuUGGCAGagaCUUUGGg -5'
13985 3' -51.2 NC_003521.1 + 215576 0.71 0.944769
Target:  5'- -gGGACCGC-GCCGUCaaccgggCUcGGAGCCUg -3'
miRNA:   3'- aaUCUGGCGuUGGCAGa------GA-CUUUGGG- -5'
13985 3' -51.2 NC_003521.1 + 129806 0.71 0.946543
Target:  5'- --cGACCGCGucaaguuggugcuggGCCGccugCUgCUGggGCCCg -3'
miRNA:   3'- aauCUGGCGU---------------UGGCa---GA-GACuuUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.