miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13987 3' -67.9 NC_003521.1 + 201380 1.08 0.000529
Target:  5'- gGCCCUCGGCGCCGGGCUCGGCCGGCAg -3'
miRNA:   3'- -CGGGAGCCGCGGCCCGAGCCGGCCGU- -5'
13987 3' -67.9 NC_003521.1 + 106105 0.7 0.280652
Target:  5'- aGgCCUCGG-GCaCGGGCguggCGGCCgugGGCAc -3'
miRNA:   3'- -CgGGAGCCgCG-GCCCGa---GCCGG---CCGU- -5'
13987 3' -67.9 NC_003521.1 + 240617 0.7 0.280652
Target:  5'- uUCCgcggCGGCGUgcggCGGGC-CGGCCGGUc -3'
miRNA:   3'- cGGGa---GCCGCG----GCCCGaGCCGGCCGu -5'
13987 3' -67.9 NC_003521.1 + 237164 0.66 0.527707
Target:  5'- gGUCC-CGGcCGCCGaGGCagacggcggCGGCCguGGCAc -3'
miRNA:   3'- -CGGGaGCC-GCGGC-CCGa--------GCCGG--CCGU- -5'
13987 3' -67.9 NC_003521.1 + 122509 0.76 0.117105
Target:  5'- gGCCaacgCGGCGgCGGGCa-GGCCGGCGg -3'
miRNA:   3'- -CGGga--GCCGCgGCCCGagCCGGCCGU- -5'
13987 3' -67.9 NC_003521.1 + 129084 0.73 0.193929
Target:  5'- aCCCUCGGCGUacugcaggcugUGGGUggCGuGCCGGCGc -3'
miRNA:   3'- cGGGAGCCGCG-----------GCCCGa-GC-CGGCCGU- -5'
13987 3' -67.9 NC_003521.1 + 29707 0.73 0.202767
Target:  5'- cGUCCUCGGCGCCuGGCUgcUGaGCCucGGCGc -3'
miRNA:   3'- -CGGGAGCCGCGGcCCGA--GC-CGG--CCGU- -5'
13987 3' -67.9 NC_003521.1 + 196975 0.72 0.216679
Target:  5'- cGgCCggGGCGCCugugacGGGCccgCGGCCGGCGg -3'
miRNA:   3'- -CgGGagCCGCGG------CCCGa--GCCGGCCGU- -5'
13987 3' -67.9 NC_003521.1 + 237388 0.72 0.241676
Target:  5'- uGCCCUCGGCGUC-GGCaUGGCgGGgGu -3'
miRNA:   3'- -CGGGAGCCGCGGcCCGaGCCGgCCgU- -5'
13987 3' -67.9 NC_003521.1 + 39638 0.71 0.274792
Target:  5'- gGCCuCUCGuugcgcccacuuGCGCauGGCUCGGCUGGUg -3'
miRNA:   3'- -CGG-GAGC------------CGCGgcCCGAGCCGGCCGu -5'
13987 3' -67.9 NC_003521.1 + 207902 0.71 0.257799
Target:  5'- gGCUCUcCGGCcgccaccuacGCCGGGggCGGCgGGCAc -3'
miRNA:   3'- -CGGGA-GCCG----------CGGCCCgaGCCGgCCGU- -5'
13987 3' -67.9 NC_003521.1 + 167154 0.72 0.2314
Target:  5'- cGCCUUgGGCGCCucGGGCgucuuggaggCGGCCgcGGCGg -3'
miRNA:   3'- -CGGGAgCCGCGG--CCCGa---------GCCGG--CCGU- -5'
13987 3' -67.9 NC_003521.1 + 111100 0.83 0.039736
Target:  5'- cGCgCUCGGCGUcgaCGGGCcgCGGCCGGCAg -3'
miRNA:   3'- -CGgGAGCCGCG---GCCCGa-GCCGGCCGU- -5'
13987 3' -67.9 NC_003521.1 + 208998 0.71 0.257799
Target:  5'- aCCUUCGGCGcCCGGGC-CGaGaCGGCGc -3'
miRNA:   3'- cGGGAGCCGC-GGCCCGaGC-CgGCCGU- -5'
13987 3' -67.9 NC_003521.1 + 169285 0.82 0.044892
Target:  5'- cGUCUUCGGCGgCGGGCucggugacgUCGGCCGGCGu -3'
miRNA:   3'- -CGGGAGCCGCgGCCCG---------AGCCGGCCGU- -5'
13987 3' -67.9 NC_003521.1 + 39434 0.72 0.226401
Target:  5'- uCCCguaggCGGCGCCGuGGCUCccggGGaCGGCAg -3'
miRNA:   3'- cGGGa----GCCGCGGC-CCGAG----CCgGCCGU- -5'
13987 3' -67.9 NC_003521.1 + 223666 0.71 0.26903
Target:  5'- gGCCCcgUUGGCcagggaggGUCGGGCgaagCGcGCCGGCAg -3'
miRNA:   3'- -CGGG--AGCCG--------CGGCCCGa---GC-CGGCCGU- -5'
13987 3' -67.9 NC_003521.1 + 68 0.7 0.280652
Target:  5'- uUCCgcggCGGCGUgcggCGGGC-CGGCCGGUc -3'
miRNA:   3'- cGGGa---GCCGCG----GCCCGaGCCGGCCGu -5'
13987 3' -67.9 NC_003521.1 + 210732 0.81 0.05453
Target:  5'- aGCCCUCGGCGCUGcuaccGUgagCGGCCGGCGg -3'
miRNA:   3'- -CGGGAGCCGCGGCc----CGa--GCCGGCCGU- -5'
13987 3' -67.9 NC_003521.1 + 176065 0.73 0.198305
Target:  5'- cGCCC--GGUGCCGcGC-CGGCCGGCGu -3'
miRNA:   3'- -CGGGagCCGCGGCcCGaGCCGGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.