Results 1 - 20 of 63 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13988 | 5' | -54.4 | NC_003521.1 | + | 201259 | 1.13 | 0.004245 |
Target: 5'- gGCAGGACUCCGAUGCGAACUCGGAGGg -3' miRNA: 3'- -CGUCCUGAGGCUACGCUUGAGCCUCC- -5' |
|||||||
13988 | 5' | -54.4 | NC_003521.1 | + | 76700 | 0.79 | 0.496392 |
Target: 5'- aGC-GGAUUCC--UGCGAAUUCGGAGGa -3' miRNA: 3'- -CGuCCUGAGGcuACGCUUGAGCCUCC- -5' |
|||||||
13988 | 5' | -54.4 | NC_003521.1 | + | 187615 | 0.77 | 0.592464 |
Target: 5'- cGC-GGACUCCcg-GCGAGCUCaccGGAGGg -3' miRNA: 3'- -CGuCCUGAGGcuaCGCUUGAG---CCUCC- -5' |
|||||||
13988 | 5' | -54.4 | NC_003521.1 | + | 235582 | 0.75 | 0.689107 |
Target: 5'- cGCGGGACgugcgggaggaCGAgagGCGGACUCGGGcGGa -3' miRNA: 3'- -CGUCCUGag---------GCUa--CGCUUGAGCCU-CC- -5' |
|||||||
13988 | 5' | -54.4 | NC_003521.1 | + | 209576 | 0.75 | 0.69106 |
Target: 5'- gGCGGGGgUCCGGggGCGcACguagCGGAGGu -3' miRNA: 3'- -CGUCCUgAGGCUa-CGCuUGa---GCCUCC- -5' |
|||||||
13988 | 5' | -54.4 | NC_003521.1 | + | 169621 | 0.74 | 0.757783 |
Target: 5'- -gGGGACgaggCgGAUGCGAAUUCgaGGAGGu -3' miRNA: 3'- cgUCCUGa---GgCUACGCUUGAG--CCUCC- -5' |
|||||||
13988 | 5' | -54.4 | NC_003521.1 | + | 86254 | 0.74 | 0.739113 |
Target: 5'- uGCAGGGCgaagucggCCGGcgagGCGAAgUUGGGGGu -3' miRNA: 3'- -CGUCCUGa-------GGCUa---CGCUUgAGCCUCC- -5' |
|||||||
13988 | 5' | -54.4 | NC_003521.1 | + | 171420 | 0.73 | 0.801634 |
Target: 5'- aGCAGGagGCUCaCGGUGCGAuugaggaGCagGGGGGu -3' miRNA: 3'- -CGUCC--UGAG-GCUACGCU-------UGagCCUCC- -5' |
|||||||
13988 | 5' | -54.4 | NC_003521.1 | + | 172422 | 0.72 | 0.85133 |
Target: 5'- cGCGGGAC-CCGAgGCGGA---GGAGGa -3' miRNA: 3'- -CGUCCUGaGGCUaCGCUUgagCCUCC- -5' |
|||||||
13988 | 5' | -54.4 | NC_003521.1 | + | 157028 | 0.72 | 0.843618 |
Target: 5'- aGCAGGuuUCgGggGCGcGgUCGGAGGa -3' miRNA: 3'- -CGUCCugAGgCuaCGCuUgAGCCUCC- -5' |
|||||||
13988 | 5' | -54.4 | NC_003521.1 | + | 9077 | 0.72 | 0.826845 |
Target: 5'- cGCAGGAgUCCGGaauccagUGaagGAGC-CGGAGGa -3' miRNA: 3'- -CGUCCUgAGGCU-------ACg--CUUGaGCCUCC- -5' |
|||||||
13988 | 5' | -54.4 | NC_003521.1 | + | 72715 | 0.71 | 0.866193 |
Target: 5'- cCAGGACcCCGG-GCGcGugUUGGAGGg -3' miRNA: 3'- cGUCCUGaGGCUaCGC-UugAGCCUCC- -5' |
|||||||
13988 | 5' | -54.4 | NC_003521.1 | + | 133509 | 0.71 | 0.866193 |
Target: 5'- uGCGGGGCccaacCCGcgGCGA-UUCGGAGa -3' miRNA: 3'- -CGUCCUGa----GGCuaCGCUuGAGCCUCc -5' |
|||||||
13988 | 5' | -54.4 | NC_003521.1 | + | 238455 | 0.7 | 0.89352 |
Target: 5'- cGCAGGGCggCCucgGCGGGCggggCGGAGa -3' miRNA: 3'- -CGUCCUGa-GGcuaCGCUUGa---GCCUCc -5' |
|||||||
13988 | 5' | -54.4 | NC_003521.1 | + | 27579 | 0.7 | 0.89352 |
Target: 5'- cGCGucGGACUCCGAUGCGGucuGCUCu---- -3' miRNA: 3'- -CGU--CCUGAGGCUACGCU---UGAGccucc -5' |
|||||||
13988 | 5' | -54.4 | NC_003521.1 | + | 113898 | 0.7 | 0.92233 |
Target: 5'- aGCAGGuaggcgaGCUgCUGA-GCGAGCUggUGGAGGa -3' miRNA: 3'- -CGUCC-------UGA-GGCUaCGCUUGA--GCCUCC- -5' |
|||||||
13988 | 5' | -54.4 | NC_003521.1 | + | 105625 | 0.7 | 0.905916 |
Target: 5'- aGCAGGGCgugCuCGGgcgugUGCGugaagcccAGCUCGGGGGu -3' miRNA: 3'- -CGUCCUGa--G-GCU-----ACGC--------UUGAGCCUCC- -5' |
|||||||
13988 | 5' | -54.4 | NC_003521.1 | + | 38227 | 0.7 | 0.89352 |
Target: 5'- cGCAGGGCggCCucgGCGGGCggggCGGAGa -3' miRNA: 3'- -CGUCCUGa-GGcuaCGCUUGa---GCCUCc -5' |
|||||||
13988 | 5' | -54.4 | NC_003521.1 | + | 44252 | 0.7 | 0.911786 |
Target: 5'- cGCGGGAgUCCG--GCGucacGC-CGGAGGa -3' miRNA: 3'- -CGUCCUgAGGCuaCGCu---UGaGCCUCC- -5' |
|||||||
13988 | 5' | -54.4 | NC_003521.1 | + | 165116 | 0.7 | 0.911786 |
Target: 5'- aGCGGcGGCUgUGGUGCGGA--CGGGGGc -3' miRNA: 3'- -CGUC-CUGAgGCUACGCUUgaGCCUCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home