miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13989 3' -55.6 NC_003521.1 + 142397 0.66 0.969212
Target:  5'- gAG-GCCGcGGcCCUGGCCGccCUGGc -3'
miRNA:   3'- gUCgCGGCaCUaGGACCGGUuuGACC- -5'
13989 3' -55.6 NC_003521.1 + 122941 0.66 0.966211
Target:  5'- cCAGCaCCGUGAUCUcGaGCCAcguGCgGGg -3'
miRNA:   3'- -GUCGcGGCACUAGGaC-CGGUu--UGaCC- -5'
13989 3' -55.6 NC_003521.1 + 204139 0.66 0.966211
Target:  5'- aGGCGCCG-GAgCCcGGCCucAGCUcGGc -3'
miRNA:   3'- gUCGCGGCaCUaGGaCCGGu-UUGA-CC- -5'
13989 3' -55.6 NC_003521.1 + 54657 0.66 0.968921
Target:  5'- -cGCGCaCGauGUCCUGGCCGugcacgcaggccgAGCUGa -3'
miRNA:   3'- guCGCG-GCacUAGGACCGGU-------------UUGACc -5'
13989 3' -55.6 NC_003521.1 + 124555 0.66 0.966211
Target:  5'- -uGCGCaCGUacgucacgaucaGGUCCgaGGCCAggUUGGc -3'
miRNA:   3'- guCGCG-GCA------------CUAGGa-CCGGUuuGACC- -5'
13989 3' -55.6 NC_003521.1 + 219251 0.66 0.966211
Target:  5'- gCAGCGCCG-GGUagagcagGGCCcgcagGGGCUGGc -3'
miRNA:   3'- -GUCGCGGCaCUAgga----CCGG-----UUUGACC- -5'
13989 3' -55.6 NC_003521.1 + 174508 0.66 0.969212
Target:  5'- gCAGgGCCGcGA---UGGCCGcGCUGGu -3'
miRNA:   3'- -GUCgCGGCaCUaggACCGGUuUGACC- -5'
13989 3' -55.6 NC_003521.1 + 81172 0.66 0.969212
Target:  5'- -uGCGCCGuUGGUCCacgcaccaGGCCucggcgauCUGGg -3'
miRNA:   3'- guCGCGGC-ACUAGGa-------CCGGuuu-----GACC- -5'
13989 3' -55.6 NC_003521.1 + 120003 0.66 0.969212
Target:  5'- -uGCGCCGcuggcuguaguUGAUCaggucGGCCuuGAGCUGGu -3'
miRNA:   3'- guCGCGGC-----------ACUAGga---CCGG--UUUGACC- -5'
13989 3' -55.6 NC_003521.1 + 134212 0.66 0.96301
Target:  5'- aAGCGCUgGUGccgCUUGGCCGAguaGCUGc -3'
miRNA:   3'- gUCGCGG-CACua-GGACCGGUU---UGACc -5'
13989 3' -55.6 NC_003521.1 + 39811 0.66 0.972018
Target:  5'- gGGCGCCGggcGGUCCUccGCCGA--UGGc -3'
miRNA:   3'- gUCGCGGCa--CUAGGAc-CGGUUugACC- -5'
13989 3' -55.6 NC_003521.1 + 23076 0.66 0.955986
Target:  5'- -cGCGuCUGUGGugucugcgUCCgUGGCCGGGCgGGg -3'
miRNA:   3'- guCGC-GGCACU--------AGG-ACCGGUUUGaCC- -5'
13989 3' -55.6 NC_003521.1 + 240038 0.66 0.972018
Target:  5'- gGGCGCCGggcGGUCCUccGCCGA--UGGc -3'
miRNA:   3'- gUCGCGGCa--CUAGGAc-CGGUUugACC- -5'
13989 3' -55.6 NC_003521.1 + 76371 0.66 0.955986
Target:  5'- gCGGCGaCCGUGAcggCCgcGGCCGcGgUGGc -3'
miRNA:   3'- -GUCGC-GGCACUa--GGa-CCGGUuUgACC- -5'
13989 3' -55.6 NC_003521.1 + 173746 0.66 0.955986
Target:  5'- gUAGCG-CGUGAUCUggGGCCAGAa--- -3'
miRNA:   3'- -GUCGCgGCACUAGGa-CCGGUUUgacc -5'
13989 3' -55.6 NC_003521.1 + 130347 0.66 0.955986
Target:  5'- uCAGCGCCcUGAUCCccuGCCugGAGCaGGa -3'
miRNA:   3'- -GUCGCGGcACUAGGac-CGG--UUUGaCC- -5'
13989 3' -55.6 NC_003521.1 + 14771 0.66 0.966211
Target:  5'- -cGCGCCu---UCgUGGCCGAgguGCUGGu -3'
miRNA:   3'- guCGCGGcacuAGgACCGGUU---UGACC- -5'
13989 3' -55.6 NC_003521.1 + 211365 0.66 0.966211
Target:  5'- gCAGCaGCCGgucgcgGAUCaugaaCUGGCCcacgcGCUGGu -3'
miRNA:   3'- -GUCG-CGGCa-----CUAG-----GACCGGuu---UGACC- -5'
13989 3' -55.6 NC_003521.1 + 196881 0.66 0.959603
Target:  5'- gCAGcCGCCgGUGAUCgUcGCCGAAgaGGu -3'
miRNA:   3'- -GUC-GCGG-CACUAGgAcCGGUUUgaCC- -5'
13989 3' -55.6 NC_003521.1 + 28391 0.66 0.959603
Target:  5'- -cGUGUCGcGAcgCCUGGCCAucaUGGg -3'
miRNA:   3'- guCGCGGCaCUa-GGACCGGUuugACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.