miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13989 3' -55.6 NC_003521.1 + 1503 0.71 0.768462
Target:  5'- -uGCGCCaacccuggGUGAUCCUgGGCUccuggcagGAGCUGGa -3'
miRNA:   3'- guCGCGG--------CACUAGGA-CCGG--------UUUGACC- -5'
13989 3' -55.6 NC_003521.1 + 12170 0.68 0.9135
Target:  5'- gUAGCuGCCuacUGAUCCUGGUCuuGgUGGu -3'
miRNA:   3'- -GUCG-CGGc--ACUAGGACCGGuuUgACC- -5'
13989 3' -55.6 NC_003521.1 + 14771 0.66 0.966211
Target:  5'- -cGCGCCu---UCgUGGCCGAgguGCUGGu -3'
miRNA:   3'- guCGCGGcacuAGgACCGGUU---UGACC- -5'
13989 3' -55.6 NC_003521.1 + 16218 0.68 0.919122
Target:  5'- gCGGCGCCcUGccgCCUGGCCGAguGCg-- -3'
miRNA:   3'- -GUCGCGGcACua-GGACCGGUU--UGacc -5'
13989 3' -55.6 NC_003521.1 + 16289 0.71 0.812726
Target:  5'- gGGCGCCGUGGgugCCUaccGGCCcGGC-GGc -3'
miRNA:   3'- gUCGCGGCACUa--GGA---CCGGuUUGaCC- -5'
13989 3' -55.6 NC_003521.1 + 19944 0.68 0.924517
Target:  5'- gGGCGagauCGUGGUgaggUGGCCGGGCUGGc -3'
miRNA:   3'- gUCGCg---GCACUAgg--ACCGGUUUGACC- -5'
13989 3' -55.6 NC_003521.1 + 20677 0.71 0.767544
Target:  5'- uGGCGCUGUucaucaccuucacGggCCUGGCCuuuCUGGg -3'
miRNA:   3'- gUCGCGGCA-------------CuaGGACCGGuuuGACC- -5'
13989 3' -55.6 NC_003521.1 + 22397 0.67 0.943838
Target:  5'- uGGUGCCGccgcuGUCgCUGGCCAuGCUGc -3'
miRNA:   3'- gUCGCGGCac---UAG-GACCGGUuUGACc -5'
13989 3' -55.6 NC_003521.1 + 23076 0.66 0.955986
Target:  5'- -cGCGuCUGUGGugucugcgUCCgUGGCCGGGCgGGg -3'
miRNA:   3'- guCGC-GGCACU--------AGG-ACCGGUUUGaCC- -5'
13989 3' -55.6 NC_003521.1 + 24645 0.71 0.812726
Target:  5'- uCAGCGCCuucGUCCUGGC---GCUGGu -3'
miRNA:   3'- -GUCGCGGcacUAGGACCGguuUGACC- -5'
13989 3' -55.6 NC_003521.1 + 27360 0.66 0.969212
Target:  5'- cCGGCGCCGUcaugacgugcGAcgCCUucaaGGCCcgucGCUGGg -3'
miRNA:   3'- -GUCGCGGCA----------CUa-GGA----CCGGuu--UGACC- -5'
13989 3' -55.6 NC_003521.1 + 28391 0.66 0.959603
Target:  5'- -cGUGUCGcGAcgCCUGGCCAucaUGGg -3'
miRNA:   3'- guCGCGGCaCUa-GGACCGGUuugACC- -5'
13989 3' -55.6 NC_003521.1 + 29106 0.72 0.730932
Target:  5'- cCAGUG-CGUGAUCCgccacGGCggCAAGCUGGa -3'
miRNA:   3'- -GUCGCgGCACUAGGa----CCG--GUUUGACC- -5'
13989 3' -55.6 NC_003521.1 + 31145 0.72 0.759231
Target:  5'- gCAGCGUuaCGUGcUCUUGGCCuAugUGGu -3'
miRNA:   3'- -GUCGCG--GCACuAGGACCGGuUugACC- -5'
13989 3' -55.6 NC_003521.1 + 32285 0.67 0.948107
Target:  5'- ---aGCCGUGA-CCUcGGCCGAAUgGGc -3'
miRNA:   3'- gucgCGGCACUaGGA-CCGGUUUGaCC- -5'
13989 3' -55.6 NC_003521.1 + 36653 0.7 0.853117
Target:  5'- aGGCGCaCGUagaguacgugggGGUCUcGGCCGAGCUGa -3'
miRNA:   3'- gUCGCG-GCA------------CUAGGaCCGGUUUGACc -5'
13989 3' -55.6 NC_003521.1 + 38827 0.69 0.87301
Target:  5'- gCGGCGCCGUGuuccgaggaagagagCCUGGCUgaGGACgaGGc -3'
miRNA:   3'- -GUCGCGGCACua-------------GGACCGG--UUUGa-CC- -5'
13989 3' -55.6 NC_003521.1 + 39811 0.66 0.972018
Target:  5'- gGGCGCCGggcGGUCCUccGCCGA--UGGc -3'
miRNA:   3'- gUCGCGGCa--CUAGGAc-CGGUUugACC- -5'
13989 3' -55.6 NC_003521.1 + 39883 0.71 0.804152
Target:  5'- gGGCGCCGUacagGGUgUUGGCCGAcuGCgGGa -3'
miRNA:   3'- gUCGCGGCA----CUAgGACCGGUU--UGaCC- -5'
13989 3' -55.6 NC_003521.1 + 44717 0.68 0.924517
Target:  5'- -cGCGCCa-GAUCCUGGUgAcGCUGa -3'
miRNA:   3'- guCGCGGcaCUAGGACCGgUuUGACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.