miRNA display CGI


Results 1 - 20 of 108 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13989 3' -55.6 NC_003521.1 + 59716 0.68 0.9135
Target:  5'- -cGCGCCGU------GGCCGAGCUGGu -3'
miRNA:   3'- guCGCGGCAcuaggaCCGGUUUGACC- -5'
13989 3' -55.6 NC_003521.1 + 216340 0.7 0.853117
Target:  5'- gUAGCGCCaGUaGAUCCagcacgcgcUGGCCAGGCa-- -3'
miRNA:   3'- -GUCGCGG-CA-CUAGG---------ACCGGUUUGacc -5'
13989 3' -55.6 NC_003521.1 + 239054 0.69 0.87301
Target:  5'- gCGGCGCCGUGuuccgaggaagagagCCUGGCUgaGGACgaGGc -3'
miRNA:   3'- -GUCGCGGCACua-------------GGACCGG--UUUGa-CC- -5'
13989 3' -55.6 NC_003521.1 + 45292 0.69 0.882063
Target:  5'- gGGCGCCGcUGggCCaGGagccggagcCCGAGCUGGc -3'
miRNA:   3'- gUCGCGGC-ACuaGGaCC---------GGUUUGACC- -5'
13989 3' -55.6 NC_003521.1 + 144050 0.69 0.888785
Target:  5'- gCGGCGCU----UCUgcaUGGCCGAGCUGGc -3'
miRNA:   3'- -GUCGCGGcacuAGG---ACCGGUUUGACC- -5'
13989 3' -55.6 NC_003521.1 + 79564 0.69 0.895293
Target:  5'- -uGcCGCCGUcgcugcucuGAUCCUGGCCGcuACUGc -3'
miRNA:   3'- guC-GCGGCA---------CUAGGACCGGUu-UGACc -5'
13989 3' -55.6 NC_003521.1 + 180946 0.68 0.907653
Target:  5'- gCGGUGCCGUaGUCCgcggGGCUc--CUGGa -3'
miRNA:   3'- -GUCGCGGCAcUAGGa---CCGGuuuGACC- -5'
13989 3' -55.6 NC_003521.1 + 12170 0.68 0.9135
Target:  5'- gUAGCuGCCuacUGAUCCUGGUCuuGgUGGu -3'
miRNA:   3'- -GUCG-CGGc--ACUAGGACCGGuuUgACC- -5'
13989 3' -55.6 NC_003521.1 + 203110 0.68 0.9135
Target:  5'- gCAGCGCCG----CCUGGCCAAAg--- -3'
miRNA:   3'- -GUCGCGGCacuaGGACCGGUUUgacc -5'
13989 3' -55.6 NC_003521.1 + 197167 0.7 0.845393
Target:  5'- -cGCGCUG-GG-CCUGGCaGGGCUGGa -3'
miRNA:   3'- guCGCGGCaCUaGGACCGgUUUGACC- -5'
13989 3' -55.6 NC_003521.1 + 213022 0.71 0.812726
Target:  5'- uGGCGCCGggcGAgCC-GGCCGAGCgGGc -3'
miRNA:   3'- gUCGCGGCa--CUaGGaCCGGUUUGaCC- -5'
13989 3' -55.6 NC_003521.1 + 39883 0.71 0.804152
Target:  5'- gGGCGCCGUacagGGUgUUGGCCGAcuGCgGGa -3'
miRNA:   3'- gUCGCGGCA----CUAgGACCGGUU--UGaCC- -5'
13989 3' -55.6 NC_003521.1 + 139380 0.76 0.534074
Target:  5'- gAGCGCCGUGcUCUUGGCCccGCggUGGu -3'
miRNA:   3'- gUCGCGGCACuAGGACCGGuuUG--ACC- -5'
13989 3' -55.6 NC_003521.1 + 77843 0.73 0.701904
Target:  5'- -cGCGCaugggGAUCUUGGCCAGACgGGc -3'
miRNA:   3'- guCGCGgca--CUAGGACCGGUUUGaCC- -5'
13989 3' -55.6 NC_003521.1 + 85740 0.72 0.749893
Target:  5'- gCAGCGCCGcGAaCUUGGCCAugAGCgaGGu -3'
miRNA:   3'- -GUCGCGGCaCUaGGACCGGU--UUGa-CC- -5'
13989 3' -55.6 NC_003521.1 + 124177 0.72 0.749893
Target:  5'- aUAGCGCCuGUGcgCCU-GCC-GGCUGGg -3'
miRNA:   3'- -GUCGCGG-CACuaGGAcCGGuUUGACC- -5'
13989 3' -55.6 NC_003521.1 + 201730 0.71 0.768462
Target:  5'- -uGCGCCaacccuggGUGAUCCUgGGCUccuggcagGAGCUGGa -3'
miRNA:   3'- guCGCGG--------CACUAGGA-CCGG--------UUUGACC- -5'
13989 3' -55.6 NC_003521.1 + 165951 0.71 0.777578
Target:  5'- gCAGCGCCGUGucGUgCUcGGgCAGGCUGa -3'
miRNA:   3'- -GUCGCGGCAC--UAgGA-CCgGUUUGACc -5'
13989 3' -55.6 NC_003521.1 + 63972 0.71 0.78657
Target:  5'- gCGGCGCCauaaccaGAUCCUGGCCGGcuuuCUGc -3'
miRNA:   3'- -GUCGCGGca-----CUAGGACCGGUUu---GACc -5'
13989 3' -55.6 NC_003521.1 + 148935 0.71 0.804152
Target:  5'- gCAGCGCCGUG---CUGGCgCGugugcuGCUGGa -3'
miRNA:   3'- -GUCGCGGCACuagGACCG-GUu-----UGACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.