miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13989 3' -55.6 NC_003521.1 + 200478 1.09 0.004943
Target:  5'- gCAGCGCCGUGAUCCUGGCCAAACUGGc -3'
miRNA:   3'- -GUCGCGGCACUAGGACCGGUUUGACC- -5'
13989 3' -55.6 NC_003521.1 + 89167 0.84 0.207005
Target:  5'- aCGGCuggGCCGUGggCCUGGCCcuGCUGGa -3'
miRNA:   3'- -GUCG---CGGCACuaGGACCGGuuUGACC- -5'
13989 3' -55.6 NC_003521.1 + 186309 0.79 0.35873
Target:  5'- gCGGCGCCGUgcaGAUCCUGGuCCAcGCcGGg -3'
miRNA:   3'- -GUCGCGGCA---CUAGGACC-GGUuUGaCC- -5'
13989 3' -55.6 NC_003521.1 + 139060 0.78 0.44151
Target:  5'- aCGGCGCCGcaGAUcacCCUGGCCucggGGCUGGa -3'
miRNA:   3'- -GUCGCGGCa-CUA---GGACCGGu---UUGACC- -5'
13989 3' -55.6 NC_003521.1 + 131226 0.76 0.514928
Target:  5'- gGGC-CUGUGcUCgCUGGCCGAGCUGGc -3'
miRNA:   3'- gUCGcGGCACuAG-GACCGGUUUGACC- -5'
13989 3' -55.6 NC_003521.1 + 139380 0.76 0.534074
Target:  5'- gAGCGCCGUGcUCUUGGCCccGCggUGGu -3'
miRNA:   3'- gUCGCGGCACuAGGACCGGuuUG--ACC- -5'
13989 3' -55.6 NC_003521.1 + 139207 0.75 0.60274
Target:  5'- cCAGCGCCG-GGcCCUGGCCGAcgucCUGa -3'
miRNA:   3'- -GUCGCGGCaCUaGGACCGGUUu---GACc -5'
13989 3' -55.6 NC_003521.1 + 56921 0.74 0.622638
Target:  5'- aCAGCGCCGUGAcggCCgUGGCUcugcAGCUGa -3'
miRNA:   3'- -GUCGCGGCACUa--GG-ACCGGu---UUGACc -5'
13989 3' -55.6 NC_003521.1 + 77843 0.73 0.701904
Target:  5'- -cGCGCaugggGAUCUUGGCCAGACgGGc -3'
miRNA:   3'- guCGCGgca--CUAGGACCGGUUUGaCC- -5'
13989 3' -55.6 NC_003521.1 + 29106 0.72 0.730932
Target:  5'- cCAGUG-CGUGAUCCgccacGGCggCAAGCUGGa -3'
miRNA:   3'- -GUCGCgGCACUAGGa----CCG--GUUUGACC- -5'
13989 3' -55.6 NC_003521.1 + 91939 0.72 0.740458
Target:  5'- uCGGCGUCGgccacggCCgaGGCCAGGCUGGc -3'
miRNA:   3'- -GUCGCGGCacua---GGa-CCGGUUUGACC- -5'
13989 3' -55.6 NC_003521.1 + 87268 0.72 0.740458
Target:  5'- -uGCGCCGUGcgCgUGGCCA-ACgGGc -3'
miRNA:   3'- guCGCGGCACuaGgACCGGUuUGaCC- -5'
13989 3' -55.6 NC_003521.1 + 124177 0.72 0.749893
Target:  5'- aUAGCGCCuGUGcgCCU-GCC-GGCUGGg -3'
miRNA:   3'- -GUCGCGG-CACuaGGAcCGGuUUGACC- -5'
13989 3' -55.6 NC_003521.1 + 85740 0.72 0.749893
Target:  5'- gCAGCGCCGcGAaCUUGGCCAugAGCgaGGu -3'
miRNA:   3'- -GUCGCGGCaCUaGGACCGGU--UUGa-CC- -5'
13989 3' -55.6 NC_003521.1 + 31145 0.72 0.759231
Target:  5'- gCAGCGUuaCGUGcUCUUGGCCuAugUGGu -3'
miRNA:   3'- -GUCGCG--GCACuAGGACCGGuUugACC- -5'
13989 3' -55.6 NC_003521.1 + 20677 0.71 0.767544
Target:  5'- uGGCGCUGUucaucaccuucacGggCCUGGCCuuuCUGGg -3'
miRNA:   3'- gUCGCGGCA-------------CuaGGACCGGuuuGACC- -5'
13989 3' -55.6 NC_003521.1 + 1503 0.71 0.768462
Target:  5'- -uGCGCCaacccuggGUGAUCCUgGGCUccuggcagGAGCUGGa -3'
miRNA:   3'- guCGCGG--------CACUAGGA-CCGG--------UUUGACC- -5'
13989 3' -55.6 NC_003521.1 + 201730 0.71 0.768462
Target:  5'- -uGCGCCaacccuggGUGAUCCUgGGCUccuggcagGAGCUGGa -3'
miRNA:   3'- guCGCGG--------CACUAGGA-CCGG--------UUUGACC- -5'
13989 3' -55.6 NC_003521.1 + 95492 0.71 0.774855
Target:  5'- cCAGCGUcuuaaccaggcccuCGUGcUUCaGGCCGAACUGGa -3'
miRNA:   3'- -GUCGCG--------------GCACuAGGaCCGGUUUGACC- -5'
13989 3' -55.6 NC_003521.1 + 165951 0.71 0.777578
Target:  5'- gCAGCGCCGUGucGUgCUcGGgCAGGCUGa -3'
miRNA:   3'- -GUCGCGGCAC--UAgGA-CCgGUUUGACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.