miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13989 5' -59 NC_003521.1 + 47865 0.66 0.844259
Target:  5'- gGCCGAGaacaugcugaucaUGGCCcagugucccaGGGcGGGCUCugggAACGCa -3'
miRNA:   3'- -UGGCUCg------------ACCGG----------UUC-CCCGAG----UUGCG- -5'
13989 5' -59 NC_003521.1 + 117886 0.66 0.86729
Target:  5'- gGCCGAGCacGGCCGGGcgcGGaaaaaGCUCAagaaccacggcgguGCGCa -3'
miRNA:   3'- -UGGCUCGa-CCGGUUC---CC-----CGAGU--------------UGCG- -5'
13989 5' -59 NC_003521.1 + 130021 0.66 0.85488
Target:  5'- gGCC--GCUGGCUuucagcgucaugGAGGGGCaCGugGCc -3'
miRNA:   3'- -UGGcuCGACCGG------------UUCCCCGaGUugCG- -5'
13989 5' -59 NC_003521.1 + 129619 0.66 0.847329
Target:  5'- gUCGAGUcgccGGCCGcccggcGGGuGCUCAACGUc -3'
miRNA:   3'- uGGCUCGa---CCGGUu-----CCC-CGAGUUGCG- -5'
13989 5' -59 NC_003521.1 + 78457 0.66 0.876403
Target:  5'- cCCGAGCgaccGaagaCGGGGGGCU--GCGCg -3'
miRNA:   3'- uGGCUCGac--Cg---GUUCCCCGAguUGCG- -5'
13989 5' -59 NC_003521.1 + 49629 0.66 0.85488
Target:  5'- -aCGAGCuccUGGuCCAgcgGGGGGCagUGGCGCu -3'
miRNA:   3'- ugGCUCG---ACC-GGU---UCCCCGa-GUUGCG- -5'
13989 5' -59 NC_003521.1 + 193274 0.66 0.882515
Target:  5'- uGCgGAGCggGuGCCGGGacGGGCgucggagUCGGCGCg -3'
miRNA:   3'- -UGgCUCGa-C-CGGUUC--CCCG-------AGUUGCG- -5'
13989 5' -59 NC_003521.1 + 30448 0.66 0.883184
Target:  5'- uCCaGGC-GGCCGAGGGuGCcgauGACGCg -3'
miRNA:   3'- uGGcUCGaCCGGUUCCC-CGag--UUGCG- -5'
13989 5' -59 NC_003521.1 + 221063 0.66 0.883184
Target:  5'- gACCGAGCggUGGCUgAAGuGGaaGCcCGACGCc -3'
miRNA:   3'- -UGGCUCG--ACCGG-UUC-CC--CGaGUUGCG- -5'
13989 5' -59 NC_003521.1 + 239761 0.66 0.869422
Target:  5'- gGCgaGAGCUGGCgCAGgucGGuGGCccCGACGCc -3'
miRNA:   3'- -UGg-CUCGACCG-GUU---CC-CCGa-GUUGCG- -5'
13989 5' -59 NC_003521.1 + 106017 0.66 0.85488
Target:  5'- -aUGAGCU-GCCA--GGGCUCgGGCGCg -3'
miRNA:   3'- ugGCUCGAcCGGUucCCCGAG-UUGCG- -5'
13989 5' -59 NC_003521.1 + 17156 0.66 0.862246
Target:  5'- cCCGAcccuccCUGGCCAAcGGGGCcgaacaauuaAACGCa -3'
miRNA:   3'- uGGCUc-----GACCGGUU-CCCCGag--------UUGCG- -5'
13989 5' -59 NC_003521.1 + 163084 0.66 0.869422
Target:  5'- cGCCGAGgCcGGCCcguccucGGGcGC-CAGCGCc -3'
miRNA:   3'- -UGGCUC-GaCCGGuu-----CCC-CGaGUUGCG- -5'
13989 5' -59 NC_003521.1 + 92165 0.66 0.876403
Target:  5'- cACCG-GCUcGCCcGGGGGUcggggCGAUGCc -3'
miRNA:   3'- -UGGCuCGAcCGGuUCCCCGa----GUUGCG- -5'
13989 5' -59 NC_003521.1 + 24425 0.66 0.883184
Target:  5'- aGCCagacGGCgcaggGGCCGGcGGGCUCGgaacagguccGCGCg -3'
miRNA:   3'- -UGGc---UCGa----CCGGUUcCCCGAGU----------UGCG- -5'
13989 5' -59 NC_003521.1 + 87988 0.66 0.869422
Target:  5'- cACCGAGUUGGaacugaagaCCAGGGcGCU-GACGUg -3'
miRNA:   3'- -UGGCUCGACC---------GGUUCCcCGAgUUGCG- -5'
13989 5' -59 NC_003521.1 + 154293 0.66 0.85488
Target:  5'- aGCgGGGC-GGCaCGGcguccGGGGC-CGACGCg -3'
miRNA:   3'- -UGgCUCGaCCG-GUU-----CCCCGaGUUGCG- -5'
13989 5' -59 NC_003521.1 + 136761 0.66 0.875023
Target:  5'- cGCuCGAgcuGCUGGCCuaccugcgcgacAGcGGGCUCAcggucACGCu -3'
miRNA:   3'- -UG-GCU---CGACCGGu-----------UC-CCCGAGU-----UGCG- -5'
13989 5' -59 NC_003521.1 + 81116 0.66 0.85488
Target:  5'- gGCCGAGaggaUGGCCGAaGGGUUgAucuUGCu -3'
miRNA:   3'- -UGGCUCg---ACCGGUUcCCCGAgUu--GCG- -5'
13989 5' -59 NC_003521.1 + 27380 0.66 0.876403
Target:  5'- aGCCGGGg-GGCCAGgccacGGGGauCUCGugGUu -3'
miRNA:   3'- -UGGCUCgaCCGGUU-----CCCC--GAGUugCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.