miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13989 5' -59 NC_003521.1 + 144065 0.69 0.706949
Target:  5'- gGCCGAGCUGGCggCGcuGGGC--AACGUg -3'
miRNA:   3'- -UGGCUCGACCG--GUucCCCGagUUGCG- -5'
13989 5' -59 NC_003521.1 + 87374 0.7 0.677987
Target:  5'- gGCCGAGgUGGaggaCGAGGcGGCggaggUGACGCc -3'
miRNA:   3'- -UGGCUCgACCg---GUUCC-CCGa----GUUGCG- -5'
13989 5' -59 NC_003521.1 + 197426 0.7 0.677987
Target:  5'- cGCCGAaagcgaagagGCcaUGGCCAGGcGGcGC-CAGCGCa -3'
miRNA:   3'- -UGGCU----------CG--ACCGGUUC-CC-CGaGUUGCG- -5'
13989 5' -59 NC_003521.1 + 125790 0.7 0.677987
Target:  5'- aGCCGGccuGCgaGGCCcAGGGGUUguGCGUg -3'
miRNA:   3'- -UGGCU---CGa-CCGGuUCCCCGAguUGCG- -5'
13989 5' -59 NC_003521.1 + 155435 0.7 0.687686
Target:  5'- -gCGAGCUGGCCGAcccgcuGGGCgaguCGCa -3'
miRNA:   3'- ugGCUCGACCGGUUc-----CCCGaguuGCG- -5'
13989 5' -59 NC_003521.1 + 34286 0.7 0.687686
Target:  5'- cUCGAuuucGCccagGGCCGugAGGGGCUC-GCGCg -3'
miRNA:   3'- uGGCU----CGa---CCGGU--UCCCCGAGuUGCG- -5'
13989 5' -59 NC_003521.1 + 67994 0.7 0.687686
Target:  5'- gACCGAuCUGGCCAAa-GGC-CAGCGUg -3'
miRNA:   3'- -UGGCUcGACCGGUUccCCGaGUUGCG- -5'
13989 5' -59 NC_003521.1 + 213025 0.69 0.697342
Target:  5'- cGCCGGGCgagccGGCCGAGcGGGC-CGGaGUa -3'
miRNA:   3'- -UGGCUCGa----CCGGUUC-CCCGaGUUgCG- -5'
13989 5' -59 NC_003521.1 + 234806 0.69 0.706949
Target:  5'- gUCGGGCUccucGGCCucgucgucGGGGUUCGugGCc -3'
miRNA:   3'- uGGCUCGA----CCGGuu------CCCCGAGUugCG- -5'
13989 5' -59 NC_003521.1 + 222754 0.7 0.667279
Target:  5'- uCUGGGCUacGGCCAcggcgucGGuGGGgUCGGCGCa -3'
miRNA:   3'- uGGCUCGA--CCGGU-------UC-CCCgAGUUGCG- -5'
13989 5' -59 NC_003521.1 + 99167 0.7 0.648715
Target:  5'- gUCGAGCUcugcuucuccGGCCuGGGGGCUgAAgGUg -3'
miRNA:   3'- uGGCUCGA----------CCGGuUCCCCGAgUUgCG- -5'
13989 5' -59 NC_003521.1 + 91427 0.71 0.619332
Target:  5'- gACCGuGCgcaUGcGCCuGGGGGCUUucuauGCGCg -3'
miRNA:   3'- -UGGCuCG---AC-CGGuUCCCCGAGu----UGCG- -5'
13989 5' -59 NC_003521.1 + 176119 0.73 0.494084
Target:  5'- cACCGAuagauugGCUauaGGCCAagAGGGGCggCAugGCa -3'
miRNA:   3'- -UGGCU-------CGA---CCGGU--UCCCCGa-GUugCG- -5'
13989 5' -59 NC_003521.1 + 137010 0.73 0.513529
Target:  5'- aGCgCGAGCUGGCCGAGgcccGGGCggUCAAUaaccgGCg -3'
miRNA:   3'- -UG-GCUCGACCGGUUC----CCCG--AGUUG-----CG- -5'
13989 5' -59 NC_003521.1 + 110095 0.72 0.532332
Target:  5'- uACCGcGCUgcGGUCAAGcGGGCUCugacAGCGCc -3'
miRNA:   3'- -UGGCuCGA--CCGGUUC-CCCGAG----UUGCG- -5'
13989 5' -59 NC_003521.1 + 118207 0.72 0.541826
Target:  5'- cGCCGAGCgcgcGGCCGccgccgucgccGGGGuGgUCAAUGCc -3'
miRNA:   3'- -UGGCUCGa---CCGGU-----------UCCC-CgAGUUGCG- -5'
13989 5' -59 NC_003521.1 + 45318 0.71 0.598801
Target:  5'- cCCGAGCUGGCCGAc-GGCUacgaccucuucgcCGACGUg -3'
miRNA:   3'- uGGCUCGACCGGUUccCCGA-------------GUUGCG- -5'
13989 5' -59 NC_003521.1 + 25770 0.71 0.609547
Target:  5'- cACCaGGCa-GCCcAGGGGCUCcACGCg -3'
miRNA:   3'- -UGGcUCGacCGGuUCCCCGAGuUGCG- -5'
13989 5' -59 NC_003521.1 + 39446 0.71 0.613459
Target:  5'- gGCCGAGCccgGcGCCGAGGGccgcgucgaaggauuGCggaUCGGCGCa -3'
miRNA:   3'- -UGGCUCGa--C-CGGUUCCC---------------CG---AGUUGCG- -5'
13989 5' -59 NC_003521.1 + 77664 0.71 0.619332
Target:  5'- uGCCGucgggagacAGCaGGCCGGGGGGC---ACGCu -3'
miRNA:   3'- -UGGC---------UCGaCCGGUUCCCCGaguUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.