miRNA display CGI


Results 1 - 20 of 153 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13989 5' -59 NC_003521.1 + 200512 1.1 0.002111
Target:  5'- cACCGAGCUGGCCAAGGGGCUCAACGCc -3'
miRNA:   3'- -UGGCUCGACCGGUUCCCCGAGUUGCG- -5'
13989 5' -59 NC_003521.1 + 43486 0.78 0.276843
Target:  5'- gGCCGuGCUGGCCGcGGcGGCcaacauccgUCAGCGCc -3'
miRNA:   3'- -UGGCuCGACCGGUuCC-CCG---------AGUUGCG- -5'
13989 5' -59 NC_003521.1 + 206165 0.78 0.276843
Target:  5'- -aCGAGCUGGCCuccgaccuGGGGGGCUUuuuCGCc -3'
miRNA:   3'- ugGCUCGACCGG--------UUCCCCGAGuu-GCG- -5'
13989 5' -59 NC_003521.1 + 162236 0.75 0.391235
Target:  5'- cGCCGAcggcGCUGGCgGGGuGGGCgUCAACGg -3'
miRNA:   3'- -UGGCU----CGACCGgUUC-CCCG-AGUUGCg -5'
13989 5' -59 NC_003521.1 + 134354 0.75 0.399335
Target:  5'- cGCCGAuGCUGGCCGAGaagucGCUCAacauGCGCu -3'
miRNA:   3'- -UGGCU-CGACCGGUUCcc---CGAGU----UGCG- -5'
13989 5' -59 NC_003521.1 + 58955 0.75 0.399335
Target:  5'- -gCGAGCUcGCCGAGGGGUcgugCGugGCg -3'
miRNA:   3'- ugGCUCGAcCGGUUCCCCGa---GUugCG- -5'
13989 5' -59 NC_003521.1 + 36681 0.75 0.407542
Target:  5'- gGCCGAGCUgaGGCC---GGGCUcCGGCGCc -3'
miRNA:   3'- -UGGCUCGA--CCGGuucCCCGA-GUUGCG- -5'
13989 5' -59 NC_003521.1 + 195249 0.74 0.45891
Target:  5'- cACCGAGUaGGgCGAGaaGGGCUCcACGCu -3'
miRNA:   3'- -UGGCUCGaCCgGUUC--CCCGAGuUGCG- -5'
13989 5' -59 NC_003521.1 + 176119 0.73 0.494084
Target:  5'- cACCGAuagauugGCUauaGGCCAagAGGGGCggCAugGCa -3'
miRNA:   3'- -UGGCU-------CGA---CCGGU--UCCCCGa-GUugCG- -5'
13989 5' -59 NC_003521.1 + 194414 0.73 0.504229
Target:  5'- cGCaCGAGgaGGCCGAGGGacGCaucugCGACGCc -3'
miRNA:   3'- -UG-GCUCgaCCGGUUCCC--CGa----GUUGCG- -5'
13989 5' -59 NC_003521.1 + 137010 0.73 0.513529
Target:  5'- aGCgCGAGCUGGCCGAGgcccGGGCggUCAAUaaccgGCg -3'
miRNA:   3'- -UG-GCUCGACCGGUUC----CCCG--AGUUG-----CG- -5'
13989 5' -59 NC_003521.1 + 54441 0.72 0.522898
Target:  5'- cGCCGcuGCUugGGCCGAcGGGGCgaugguuaUCGACGCc -3'
miRNA:   3'- -UGGCu-CGA--CCGGUU-CCCCG--------AGUUGCG- -5'
13989 5' -59 NC_003521.1 + 110095 0.72 0.532332
Target:  5'- uACCGcGCUgcGGUCAAGcGGGCUCugacAGCGCc -3'
miRNA:   3'- -UGGCuCGA--CCGGUUC-CCCGAG----UUGCG- -5'
13989 5' -59 NC_003521.1 + 118207 0.72 0.541826
Target:  5'- cGCCGAGCgcgcGGCCGccgccgucgccGGGGuGgUCAAUGCc -3'
miRNA:   3'- -UGGCUCGa---CCGGU-----------UCCC-CgAGUUGCG- -5'
13989 5' -59 NC_003521.1 + 98403 0.72 0.569657
Target:  5'- uGCCGAcgcugguggugacGUUGGCCAGGGcGGC-CAGgGCc -3'
miRNA:   3'- -UGGCU-------------CGACCGGUUCC-CCGaGUUgCG- -5'
13989 5' -59 NC_003521.1 + 223937 0.72 0.570624
Target:  5'- gGCCGAGggGGUCGAGGcGGCcgCGgggaACGCa -3'
miRNA:   3'- -UGGCUCgaCCGGUUCC-CCGa-GU----UGCG- -5'
13989 5' -59 NC_003521.1 + 106575 0.72 0.570624
Target:  5'- cACCGGGUcacccUGGCCGAGGG---CGGCGCg -3'
miRNA:   3'- -UGGCUCG-----ACCGGUUCCCcgaGUUGCG- -5'
13989 5' -59 NC_003521.1 + 45318 0.71 0.598801
Target:  5'- cCCGAGCUGGCCGAc-GGCUacgaccucuucgcCGACGUg -3'
miRNA:   3'- uGGCUCGACCGGUUccCCGA-------------GUUGCG- -5'
13989 5' -59 NC_003521.1 + 212280 0.71 0.599777
Target:  5'- cACCaGGCUGGCCAGGGcgaaGGCcggCAugggcACGCa -3'
miRNA:   3'- -UGGcUCGACCGGUUCC----CCGa--GU-----UGCG- -5'
13989 5' -59 NC_003521.1 + 25770 0.71 0.609547
Target:  5'- cACCaGGCa-GCCcAGGGGCUCcACGCg -3'
miRNA:   3'- -UGGcUCGacCGGuUCCCCGAGuUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.