miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13989 5' -59 NC_003521.1 + 948 0.68 0.781035
Target:  5'- aGCCGAGCcauGCgCAAGuGGGCgCAACGa -3'
miRNA:   3'- -UGGCUCGac-CG-GUUC-CCCGaGUUGCg -5'
13989 5' -59 NC_003521.1 + 1882 0.68 0.763087
Target:  5'- uACCGcAGCUGGCgCAGGuaccgggacGGGCUUgucuucggggauGGCGCc -3'
miRNA:   3'- -UGGC-UCGACCG-GUUC---------CCCGAG------------UUGCG- -5'
13989 5' -59 NC_003521.1 + 12396 0.69 0.735388
Target:  5'- cGCCGAguucgugcuGCUGGCUGAccGGGGCU--GCGUc -3'
miRNA:   3'- -UGGCU---------CGACCGGUU--CCCCGAguUGCG- -5'
13989 5' -59 NC_003521.1 + 13880 0.68 0.744714
Target:  5'- cGCCGccauGGauuucGCCGGGGGGCcCGGCGCg -3'
miRNA:   3'- -UGGC----UCgac--CGGUUCCCCGaGUUGCG- -5'
13989 5' -59 NC_003521.1 + 14680 0.69 0.72598
Target:  5'- cGCCGAgugccgccGCUGGUgGuGGGGCaUCcGCGCc -3'
miRNA:   3'- -UGGCU--------CGACCGgUuCCCCG-AGuUGCG- -5'
13989 5' -59 NC_003521.1 + 15306 0.66 0.869423
Target:  5'- gUCGAcGCgcgacgGcGCCGAGcGGGUgaUCAGCGCg -3'
miRNA:   3'- uGGCU-CGa-----C-CGGUUC-CCCG--AGUUGCG- -5'
13989 5' -59 NC_003521.1 + 16194 0.67 0.798493
Target:  5'- uCCGAguGCUGGCCcuucGAGGuGGCg--GCGCc -3'
miRNA:   3'- uGGCU--CGACCGG----UUCC-CCGaguUGCG- -5'
13989 5' -59 NC_003521.1 + 17156 0.66 0.862246
Target:  5'- cCCGAcccuccCUGGCCAAcGGGGCcgaacaauuaAACGCa -3'
miRNA:   3'- uGGCUc-----GACCGGUU-CCCCGag--------UUGCG- -5'
13989 5' -59 NC_003521.1 + 17224 0.68 0.781035
Target:  5'- gGCCGAGgUcucggaGGCCGAGGuGGa--GGCGCg -3'
miRNA:   3'- -UGGCUCgA------CCGGUUCC-CCgagUUGCG- -5'
13989 5' -59 NC_003521.1 + 18520 0.66 0.850372
Target:  5'- cGCUGAaaaagaacaugcuacGCUGGCac-GGGGCUCuGgGCa -3'
miRNA:   3'- -UGGCU---------------CGACCGguuCCCCGAGuUgCG- -5'
13989 5' -59 NC_003521.1 + 18654 0.68 0.75395
Target:  5'- gGCCGcacggaccuGCUGGCCAcGGGGGCgc--UGCa -3'
miRNA:   3'- -UGGCu--------CGACCGGU-UCCCCGaguuGCG- -5'
13989 5' -59 NC_003521.1 + 21621 0.7 0.683811
Target:  5'- uGCCuGGCgaccgccaucaugGGCCu-GGGGCUCAGcCGCc -3'
miRNA:   3'- -UGGcUCGa------------CCGGuuCCCCGAGUU-GCG- -5'
13989 5' -59 NC_003521.1 + 24425 0.66 0.883184
Target:  5'- aGCCagacGGCgcaggGGCCGGcGGGCUCGgaacagguccGCGCg -3'
miRNA:   3'- -UGGc---UCGa----CCGGUUcCCCGAGU----------UGCG- -5'
13989 5' -59 NC_003521.1 + 25770 0.71 0.609547
Target:  5'- cACCaGGCa-GCCcAGGGGCUCcACGCg -3'
miRNA:   3'- -UGGcUCGacCGGuUCCCCGAGuUGCG- -5'
13989 5' -59 NC_003521.1 + 27380 0.66 0.876403
Target:  5'- aGCCGGGg-GGCCAGgccacGGGGauCUCGugGUu -3'
miRNA:   3'- -UGGCUCgaCCGGUU-----CCCC--GAGUugCG- -5'
13989 5' -59 NC_003521.1 + 30448 0.66 0.883184
Target:  5'- uCCaGGC-GGCCGAGGGuGCcgauGACGCg -3'
miRNA:   3'- uGGcUCGaCCGGUUCCC-CGag--UUGCG- -5'
13989 5' -59 NC_003521.1 + 32353 0.69 0.735388
Target:  5'- uGCCgGAGCcGGCgGGacGGGGCUUuugguGGCGCg -3'
miRNA:   3'- -UGG-CUCGaCCGgUU--CCCCGAG-----UUGCG- -5'
13989 5' -59 NC_003521.1 + 34286 0.7 0.687686
Target:  5'- cUCGAuuucGCccagGGCCGugAGGGGCUC-GCGCg -3'
miRNA:   3'- uGGCU----CGa---CCGGU--UCCCCGAGuUGCG- -5'
13989 5' -59 NC_003521.1 + 36185 0.68 0.763087
Target:  5'- uGCCcacgcacCUGGCCGAGcGGCUCAaACGCu -3'
miRNA:   3'- -UGGcuc----GACCGGUUCcCCGAGU-UGCG- -5'
13989 5' -59 NC_003521.1 + 36356 0.69 0.72598
Target:  5'- gGCuCGGGCUGGCguGGcGcGGCUUcGCGUg -3'
miRNA:   3'- -UG-GCUCGACCGguUC-C-CCGAGuUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.