miRNA display CGI


Results 1 - 20 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13991 3' -61.7 NC_003521.1 + 150619 0.66 0.725877
Target:  5'- -gGCUGUUGCGGCG---GCuGCUGCg -3'
miRNA:   3'- aaCGGCAACGCCGCgcaCGuCGGCGg -5'
13991 3' -61.7 NC_003521.1 + 58402 0.66 0.744407
Target:  5'- cUGCCGcgGCcGCGUGaUGCGGCgGUUg -3'
miRNA:   3'- aACGGCaaCGcCGCGC-ACGUCGgCGG- -5'
13991 3' -61.7 NC_003521.1 + 31865 0.66 0.715557
Target:  5'- -cGgCGgcGCGGUGCGaGCGGuaccgcaCCGCCa -3'
miRNA:   3'- aaCgGCaaCGCCGCGCaCGUC-------GGCGG- -5'
13991 3' -61.7 NC_003521.1 + 118273 0.66 0.723071
Target:  5'- -aGCCGgcaccaGCGGCG-GUaGCAgcagcacuaccaccGCCGCCg -3'
miRNA:   3'- aaCGGCaa----CGCCGCgCA-CGU--------------CGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 149747 0.66 0.725877
Target:  5'- -gGCagGUcuucUGCGGCGaggGCGGCCGCg -3'
miRNA:   3'- aaCGg-CA----ACGCCGCgcaCGUCGGCGg -5'
13991 3' -61.7 NC_003521.1 + 43154 0.66 0.735182
Target:  5'- gUGCaCGcgcugGUGGCGC-UGCuGCCGCa -3'
miRNA:   3'- aACG-GCaa---CGCCGCGcACGuCGGCGg -5'
13991 3' -61.7 NC_003521.1 + 104694 0.66 0.744407
Target:  5'- -gGCCGUggGCGGCGUcgacGUGCccucGaCCGCg -3'
miRNA:   3'- aaCGGCAa-CGCCGCG----CACGu---C-GGCGg -5'
13991 3' -61.7 NC_003521.1 + 56596 0.66 0.735182
Target:  5'- aUGUgGUUGauGaCGCGUaUGGCCGCCa -3'
miRNA:   3'- aACGgCAACgcC-GCGCAcGUCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 126568 0.66 0.716499
Target:  5'- -gGCCGUg--GGCaGCGggaAGCCGCCg -3'
miRNA:   3'- aaCGGCAacgCCG-CGCacgUCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 135363 0.66 0.725877
Target:  5'- -cGCCGUcuccGCGGCG-GUuaucgcccGCGGgCGCCa -3'
miRNA:   3'- aaCGGCAa---CGCCGCgCA--------CGUCgGCGG- -5'
13991 3' -61.7 NC_003521.1 + 187827 0.66 0.716499
Target:  5'- -gGCUGUUGCGcaGgGCGuUGCGGaCgGCCu -3'
miRNA:   3'- aaCGGCAACGC--CgCGC-ACGUC-GgCGG- -5'
13991 3' -61.7 NC_003521.1 + 123494 0.66 0.734255
Target:  5'- -cGCCGgcGgGGUGuCGUcgucgccGCuGCCGCCc -3'
miRNA:   3'- aaCGGCaaCgCCGC-GCA-------CGuCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 129300 0.66 0.735182
Target:  5'- -gGUCGUggaacuUGaUGGCGUGcGCcGCCGCCg -3'
miRNA:   3'- aaCGGCA------AC-GCCGCGCaCGuCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 196736 0.66 0.744407
Target:  5'- -gGUgGUggcgGCGGCGCcUGCAccgucuGCUGCCc -3'
miRNA:   3'- aaCGgCAa---CGCCGCGcACGU------CGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 99588 0.66 0.744407
Target:  5'- -gGUCGaagaacUGCGGCGCGUuggugaccuGCAG-CGCCc -3'
miRNA:   3'- aaCGGCa-----ACGCCGCGCA---------CGUCgGCGG- -5'
13991 3' -61.7 NC_003521.1 + 78139 0.66 0.725877
Target:  5'- -gGCgCGUUaGCGGCG---GCGGCCGCg -3'
miRNA:   3'- aaCG-GCAA-CGCCGCgcaCGUCGGCGg -5'
13991 3' -61.7 NC_003521.1 + 122609 0.66 0.750813
Target:  5'- uUUGCUGUUGUuccugcgucggcucGGCGCucaaCAGCCGCa -3'
miRNA:   3'- -AACGGCAACG--------------CCGCGcac-GUCGGCGg -5'
13991 3' -61.7 NC_003521.1 + 161145 0.66 0.763485
Target:  5'- -gGCCGcggGCGGuCGCGgacgucguucgcaaCAGUCGCCg -3'
miRNA:   3'- aaCGGCaa-CGCC-GCGCac------------GUCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 164460 0.66 0.744407
Target:  5'- -gGCCGUcaCGGuCGCcgcUGCcGCCGCCg -3'
miRNA:   3'- aaCGGCAacGCC-GCGc--ACGuCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 126997 0.66 0.724942
Target:  5'- cUGCCGcUGCccgacguGGCG-GUGCccgacgacGCCGCCg -3'
miRNA:   3'- aACGGCaACG-------CCGCgCACGu-------CGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.