miRNA display CGI


Results 1 - 20 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13991 3' -61.7 NC_003521.1 + 14 0.68 0.639792
Target:  5'- -aGCgagUGUGGCGCGUGUuuGCCGUg -3'
miRNA:   3'- aaCGgcaACGCCGCGCACGu-CGGCGg -5'
13991 3' -61.7 NC_003521.1 + 62 0.68 0.649475
Target:  5'- --aCCGguuuccGCGGCgGCGUGCGGCgGgCCg -3'
miRNA:   3'- aacGGCaa----CGCCG-CGCACGUCGgC-GG- -5'
13991 3' -61.7 NC_003521.1 + 357 0.76 0.218299
Target:  5'- cUGCCGgagGCGGCGCcUGCGaccGCUGCCc -3'
miRNA:   3'- aACGGCaa-CGCCGCGcACGU---CGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 396 0.66 0.753545
Target:  5'- gUGCUGgcgcGCGGCuGUGacUGCAGCUGUg -3'
miRNA:   3'- aACGGCaa--CGCCG-CGC--ACGUCGGCGg -5'
13991 3' -61.7 NC_003521.1 + 1578 0.71 0.470381
Target:  5'- -cGCCGUcgcugcUGaCGGC-CGUGCAG-CGCCa -3'
miRNA:   3'- aaCGGCA------AC-GCCGcGCACGUCgGCGG- -5'
13991 3' -61.7 NC_003521.1 + 3628 0.68 0.610739
Target:  5'- aUGuuGUUGUucucuaGCGUGCcacGGCCGCCg -3'
miRNA:   3'- aACggCAACGccg---CGCACG---UCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 5313 0.68 0.610739
Target:  5'- -cGCgGggGCGGCGUGccccGcCGGCCGCg -3'
miRNA:   3'- aaCGgCaaCGCCGCGCa---C-GUCGGCGg -5'
13991 3' -61.7 NC_003521.1 + 5536 0.67 0.707057
Target:  5'- gUGaCGgcaGcCGGCGCG-GCcGCCGCCa -3'
miRNA:   3'- aACgGCaa-C-GCCGCGCaCGuCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 6085 0.67 0.688009
Target:  5'- -gGCCGgUGCGGCgGCGUu---CCGCCa -3'
miRNA:   3'- aaCGGCaACGCCG-CGCAcgucGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 7657 0.68 0.610739
Target:  5'- -gGCCGccacgGCGGCGCGgacaGCGG-UGCCc -3'
miRNA:   3'- aaCGGCaa---CGCCGCGCa---CGUCgGCGG- -5'
13991 3' -61.7 NC_003521.1 + 12118 0.69 0.55318
Target:  5'- aUGCCGccGCcGCGCuccuucggGUGCGGCgGCCu -3'
miRNA:   3'- aACGGCaaCGcCGCG--------CACGUCGgCGG- -5'
13991 3' -61.7 NC_003521.1 + 13406 0.66 0.735183
Target:  5'- -cGUCGUUGUGGgG-GUGUcagaugggaacGGUCGCCg -3'
miRNA:   3'- aaCGGCAACGCCgCgCACG-----------UCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 13895 0.71 0.470381
Target:  5'- -cGCCGggGggccCGGCGCGgagGgGGCCGCg -3'
miRNA:   3'- aaCGGCaaC----GCCGCGCa--CgUCGGCGg -5'
13991 3' -61.7 NC_003521.1 + 13937 0.7 0.479289
Target:  5'- -gGCCGccGUGGUGCccccGCAGCUGCCc -3'
miRNA:   3'- aaCGGCaaCGCCGCGca--CGUCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 14449 0.76 0.25057
Target:  5'- -gGCCc-UGCGGCgGCGU-CAGCCGCCg -3'
miRNA:   3'- aaCGGcaACGCCG-CGCAcGUCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 15062 0.67 0.697558
Target:  5'- -aGCgCGa-GCGGCGCGUGCuGCaacaGCa -3'
miRNA:   3'- aaCG-GCaaCGCCGCGCACGuCGg---CGg -5'
13991 3' -61.7 NC_003521.1 + 15224 0.66 0.762586
Target:  5'- -gGCUGcagGCGGCcgaGCGcGaGGCCGCCg -3'
miRNA:   3'- aaCGGCaa-CGCCG---CGCaCgUCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 16851 0.7 0.538078
Target:  5'- -cGCCGgcGCaGGCggacgucuacgacguGCGUuccccGCGGCCGCCu -3'
miRNA:   3'- aaCGGCaaCG-CCG---------------CGCA-----CGUCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 17357 0.68 0.620418
Target:  5'- -gGCCGUgacGcCGGCGCG-GCGGCC-Ca -3'
miRNA:   3'- aaCGGCAa--C-GCCGCGCaCGUCGGcGg -5'
13991 3' -61.7 NC_003521.1 + 17446 0.66 0.724943
Target:  5'- -cGUCGggGCGcCGCGaUGUcgcugcugaccaaGGCCGCCg -3'
miRNA:   3'- aaCGGCaaCGCcGCGC-ACG-------------UCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.