miRNA display CGI


Results 1 - 20 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13991 3' -61.7 NC_003521.1 + 198018 1.09 0.001204
Target:  5'- aUUGCCGUUGCGGCGCGUGCAGCCGCCg -3'
miRNA:   3'- -AACGGCAACGCCGCGCACGUCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 90828 0.82 0.095698
Target:  5'- -cGUCGUcgUGCGGCGgGUGCGcGCCGCCc -3'
miRNA:   3'- aaCGGCA--ACGCCGCgCACGU-CGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 115383 0.82 0.100604
Target:  5'- -gGCCGgcaugUGCagGGCGCGgGCGGCCGCCa -3'
miRNA:   3'- aaCGGCa----ACG--CCGCGCaCGUCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 228112 0.81 0.111136
Target:  5'- -gGCUGUUGC-GCGCGUaGCAGCCGUCg -3'
miRNA:   3'- aaCGGCAACGcCGCGCA-CGUCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 130001 0.78 0.168348
Target:  5'- -cGCCGgcgGCGGCGCGcaaCGGCCGCUg -3'
miRNA:   3'- aaCGGCaa-CGCCGCGCac-GUCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 213120 0.78 0.180857
Target:  5'- -cGCUGggUGUGGCGUgGUGCGGCCGCa -3'
miRNA:   3'- aaCGGCa-ACGCCGCG-CACGUCGGCGg -5'
13991 3' -61.7 NC_003521.1 + 160328 0.77 0.203536
Target:  5'- -aGCCGUggGCGGCGCG-GUGGCCuCCg -3'
miRNA:   3'- aaCGGCAa-CGCCGCGCaCGUCGGcGG- -5'
13991 3' -61.7 NC_003521.1 + 111244 0.77 0.203536
Target:  5'- -gGCCGgcGCGGCGCGgcggaGCAGCCaucgucgggcccGCCg -3'
miRNA:   3'- aaCGGCaaCGCCGCGCa----CGUCGG------------CGG- -5'
13991 3' -61.7 NC_003521.1 + 106589 0.77 0.213279
Target:  5'- -gGCCGaggGCGGCGCGgGCAGCUacucgGCCa -3'
miRNA:   3'- aaCGGCaa-CGCCGCGCaCGUCGG-----CGG- -5'
13991 3' -61.7 NC_003521.1 + 357 0.76 0.218299
Target:  5'- cUGCCGgagGCGGCGCcUGCGaccGCUGCCc -3'
miRNA:   3'- aACGGCaa-CGCCGCGcACGU---CGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 80143 0.76 0.22342
Target:  5'- -gGCCGgUGCuGCGCGUcCAGCCGCUg -3'
miRNA:   3'- aaCGGCaACGcCGCGCAcGUCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 240108 0.76 0.25057
Target:  5'- gUGCaCGUUGgGGUggGCGUGCGGUCGUCc -3'
miRNA:   3'- aACG-GCAACgCCG--CGCACGUCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 39881 0.76 0.25057
Target:  5'- gUGCaCGUUGgGGUggGCGUGCGGUCGUCc -3'
miRNA:   3'- aACG-GCAACgCCG--CGCACGUCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 14449 0.76 0.25057
Target:  5'- -gGCCc-UGCGGCgGCGU-CAGCCGCCg -3'
miRNA:   3'- aaCGGcaACGCCG-CGCAcGUCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 224922 0.76 0.25057
Target:  5'- -gGCuCGUagaUGUacaGGCGCGUGCuGCCGCCc -3'
miRNA:   3'- aaCG-GCA---ACG---CCGCGCACGuCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 226238 0.75 0.26217
Target:  5'- gUGCCGUaGCccGGCGUGUGCAGCuucaCGUCg -3'
miRNA:   3'- aACGGCAaCG--CCGCGCACGUCG----GCGG- -5'
13991 3' -61.7 NC_003521.1 + 209704 0.75 0.279761
Target:  5'- cUGCCugcacacguucaaGUUGCGcCGCGUGUaccGGCCGCCg -3'
miRNA:   3'- aACGG-------------CAACGCcGCGCACG---UCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 123600 0.75 0.280384
Target:  5'- gUGCCcUUGCGuCGCagggGCAGCCGCCg -3'
miRNA:   3'- aACGGcAACGCcGCGca--CGUCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 204894 0.74 0.29959
Target:  5'- -gGCCGc-GCGGCGgGacgGUGGCCGCCg -3'
miRNA:   3'- aaCGGCaaCGCCGCgCa--CGUCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 130130 0.74 0.29959
Target:  5'- -cGUCGUcgGCGGCGCcgccGCuGCCGCCa -3'
miRNA:   3'- aaCGGCAa-CGCCGCGca--CGuCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.