miRNA display CGI


Results 1 - 20 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13991 3' -61.7 NC_003521.1 + 235498 0.72 0.410566
Target:  5'- -cGCCGgagucGCGGCcgGCGggGCAcGCCGCCc -3'
miRNA:   3'- aaCGGCaa---CGCCG--CGCa-CGU-CGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 53506 0.73 0.348302
Target:  5'- -cGCUGcUGCGGCGUc-GCAGCgGCCg -3'
miRNA:   3'- aaCGGCaACGCCGCGcaCGUCGgCGG- -5'
13991 3' -61.7 NC_003521.1 + 228691 0.73 0.36322
Target:  5'- gUUGauGUUGUGGU-CGUGCAGCCGCa -3'
miRNA:   3'- -AACggCAACGCCGcGCACGUCGGCGg -5'
13991 3' -61.7 NC_003521.1 + 154042 0.73 0.36322
Target:  5'- cUUGCCGcgGCaGGCGCccauaaagccGUGCAGCaGCCg -3'
miRNA:   3'- -AACGGCaaCG-CCGCG----------CACGUCGgCGG- -5'
13991 3' -61.7 NC_003521.1 + 119476 0.73 0.370077
Target:  5'- -aGCCGc-GCGGgGCGUGCAgggugaagccguuGUCGCCa -3'
miRNA:   3'- aaCGGCaaCGCCgCGCACGU-------------CGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 42614 0.72 0.394361
Target:  5'- -gGCCGccgGCGGCGCc-GUcGCCGCCa -3'
miRNA:   3'- aaCGGCaa-CGCCGCGcaCGuCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 54291 0.72 0.394361
Target:  5'- -gGCCGUUGCGGCuggccaCGUagaGCAGCgCGUCg -3'
miRNA:   3'- aaCGGCAACGCCGc-----GCA---CGUCG-GCGG- -5'
13991 3' -61.7 NC_003521.1 + 132455 0.72 0.402411
Target:  5'- -gGCUGUU-CGGCGCGUccgGuCAGCCGUCu -3'
miRNA:   3'- aaCGGCAAcGCCGCGCA---C-GUCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 143544 0.72 0.402411
Target:  5'- -cGCCGc--CGGCGaCGagcaGCAGCCGCCa -3'
miRNA:   3'- aaCGGCaacGCCGC-GCa---CGUCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 59357 0.74 0.312949
Target:  5'- -cGCUGcagGCGGCGCGc-CAGCCGCUg -3'
miRNA:   3'- aaCGGCaa-CGCCGCGCacGUCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 148939 0.74 0.306214
Target:  5'- -cGCCG-UGCuGGCGCGUGU-GCUGCUg -3'
miRNA:   3'- aaCGGCaACG-CCGCGCACGuCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 130130 0.74 0.29959
Target:  5'- -cGUCGUcgGCGGCGCcgccGCuGCCGCCa -3'
miRNA:   3'- aaCGGCAa-CGCCGCGca--CGuCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 228112 0.81 0.111136
Target:  5'- -gGCUGUUGC-GCGCGUaGCAGCCGUCg -3'
miRNA:   3'- aaCGGCAACGcCGCGCA-CGUCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 130001 0.78 0.168348
Target:  5'- -cGCCGgcgGCGGCGCGcaaCGGCCGCUg -3'
miRNA:   3'- aaCGGCaa-CGCCGCGCac-GUCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 213120 0.78 0.180857
Target:  5'- -cGCUGggUGUGGCGUgGUGCGGCCGCa -3'
miRNA:   3'- aaCGGCa-ACGCCGCG-CACGUCGGCGg -5'
13991 3' -61.7 NC_003521.1 + 80143 0.76 0.22342
Target:  5'- -gGCCGgUGCuGCGCGUcCAGCCGCUg -3'
miRNA:   3'- aaCGGCaACGcCGCGCAcGUCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 240108 0.76 0.25057
Target:  5'- gUGCaCGUUGgGGUggGCGUGCGGUCGUCc -3'
miRNA:   3'- aACG-GCAACgCCG--CGCACGUCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 224922 0.76 0.25057
Target:  5'- -gGCuCGUagaUGUacaGGCGCGUGCuGCCGCCc -3'
miRNA:   3'- aaCG-GCA---ACG---CCGCGCACGuCGGCGG- -5'
13991 3' -61.7 NC_003521.1 + 226238 0.75 0.26217
Target:  5'- gUGCCGUaGCccGGCGUGUGCAGCuucaCGUCg -3'
miRNA:   3'- aACGGCAaCG--CCGCGCACGUCG----GCGG- -5'
13991 3' -61.7 NC_003521.1 + 123600 0.75 0.280384
Target:  5'- gUGCCcUUGCGuCGCagggGCAGCCGCCg -3'
miRNA:   3'- aACGGcAACGCcGCGca--CGUCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.