miRNA display CGI


Results 1 - 20 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13992 3' -62.3 NC_003521.1 + 43836 0.66 0.751483
Target:  5'- ---cGCCGCCGGCcgcgGGCCCGUcacAGGc -3'
miRNA:   3'- gaccCGGUGGCCGaa--CUGGGCG---UCCa -5'
13992 3' -62.3 NC_003521.1 + 154296 0.66 0.751483
Target:  5'- -gGGGCgGCaCGGCguccggGGCCgaCGCGGGa -3'
miRNA:   3'- gaCCCGgUG-GCCGaa----CUGG--GCGUCCa -5'
13992 3' -62.3 NC_003521.1 + 129018 0.66 0.751483
Target:  5'- gCUGGcGCCGCCagagGGC---ACCCGCAGa- -3'
miRNA:   3'- -GACC-CGGUGG----CCGaacUGGGCGUCca -5'
13992 3' -62.3 NC_003521.1 + 54433 0.66 0.751483
Target:  5'- aCUGcuGCCGCCGcuGCUUGGgCCGaCGGGg -3'
miRNA:   3'- -GACc-CGGUGGC--CGAACUgGGC-GUCCa -5'
13992 3' -62.3 NC_003521.1 + 86221 0.66 0.750581
Target:  5'- -gGcGGCaCGCCGGCggccuugagcuccUUGACgUGCAGGg -3'
miRNA:   3'- gaC-CCG-GUGGCCG-------------AACUGgGCGUCCa -5'
13992 3' -62.3 NC_003521.1 + 224534 0.66 0.74242
Target:  5'- -cGGGCCGguaggcaccCCGGC---GCCCaGCAGGa -3'
miRNA:   3'- gaCCCGGU---------GGCCGaacUGGG-CGUCCa -5'
13992 3' -62.3 NC_003521.1 + 59617 0.66 0.74242
Target:  5'- -gGcGGCC-CCGGCggcgaccgcGGCUCGCAGGc -3'
miRNA:   3'- gaC-CCGGuGGCCGaa-------CUGGGCGUCCa -5'
13992 3' -62.3 NC_003521.1 + 32987 0.66 0.74242
Target:  5'- -aGGaGCC-CUGGCggaUGAagcCCCGCAGGc -3'
miRNA:   3'- gaCC-CGGuGGCCGa--ACU---GGGCGUCCa -5'
13992 3' -62.3 NC_003521.1 + 172399 0.66 0.733272
Target:  5'- -aGGGgCGCCGGCggagccguCgCCGCGGGa -3'
miRNA:   3'- gaCCCgGUGGCCGaacu----G-GGCGUCCa -5'
13992 3' -62.3 NC_003521.1 + 129193 0.66 0.732353
Target:  5'- uUGGGUuuCGCCGGCgguucGACcucgucgCCGCGGGg -3'
miRNA:   3'- gACCCG--GUGGCCGaa---CUG-------GGCGUCCa -5'
13992 3' -62.3 NC_003521.1 + 218034 0.66 0.714752
Target:  5'- uUGGGCgGCggCGGCg---UCCGCAGGUa -3'
miRNA:   3'- gACCCGgUG--GCCGaacuGGGCGUCCA- -5'
13992 3' -62.3 NC_003521.1 + 184638 0.66 0.714752
Target:  5'- cCUGcgccGUCACCGGCUugUGACCCGUAc-- -3'
miRNA:   3'- -GACc---CGGUGGCCGA--ACUGGGCGUcca -5'
13992 3' -62.3 NC_003521.1 + 166119 0.66 0.714752
Target:  5'- -cGGGCCugCuucagGGC--GGCCgGCAGGUc -3'
miRNA:   3'- gaCCCGGugG-----CCGaaCUGGgCGUCCA- -5'
13992 3' -62.3 NC_003521.1 + 162865 0.66 0.714752
Target:  5'- ---cGCgGCCGGCUccaaGACCCaGCAGGg -3'
miRNA:   3'- gaccCGgUGGCCGAa---CUGGG-CGUCCa -5'
13992 3' -62.3 NC_003521.1 + 88676 0.66 0.714752
Target:  5'- gUGGGCCGgCGGCccGGCUCG-GGGa -3'
miRNA:   3'- gACCCGGUgGCCGaaCUGGGCgUCCa -5'
13992 3' -62.3 NC_003521.1 + 187589 0.66 0.714752
Target:  5'- -gGGGCUucGCCGGCggucgcuucGCCCGCGGa- -3'
miRNA:   3'- gaCCCGG--UGGCCGaac------UGGGCGUCca -5'
13992 3' -62.3 NC_003521.1 + 123035 0.66 0.705397
Target:  5'- -gGGGCCGuagaaaCGGCgauaGAUCCGCAGcGUg -3'
miRNA:   3'- gaCCCGGUg-----GCCGaa--CUGGGCGUC-CA- -5'
13992 3' -62.3 NC_003521.1 + 60827 0.66 0.705397
Target:  5'- gCUGGccuucaguaGCCACCaGGaCUU--CCCGCAGGUg -3'
miRNA:   3'- -GACC---------CGGUGG-CC-GAAcuGGGCGUCCA- -5'
13992 3' -62.3 NC_003521.1 + 206637 0.66 0.704458
Target:  5'- gUGGGCCacgauaaGCUGGUcaagUUGGCCCGCGa-- -3'
miRNA:   3'- gACCCGG-------UGGCCG----AACUGGGCGUcca -5'
13992 3' -62.3 NC_003521.1 + 56253 0.67 0.700697
Target:  5'- -gGGGCUgaggcagGCCGGCaggcagagguugGACUCGCAGGc -3'
miRNA:   3'- gaCCCGG-------UGGCCGaa----------CUGGGCGUCCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.