miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13992 5' -54.2 NC_003521.1 + 235352 0.67 0.970135
Target:  5'- gGGA-CUGGAAGUCgcacgcgcucuuCACCAucuGGGACgggauggagUCCg -3'
miRNA:   3'- -CCUaGACCUUCAG------------GUGGU---CCCUG---------AGG- -5'
13992 5' -54.2 NC_003521.1 + 235138 0.66 0.982037
Target:  5'- gGGA--UGGugaucgCCACCAcGGACUCCg -3'
miRNA:   3'- -CCUagACCuuca--GGUGGUcCCUGAGG- -5'
13992 5' -54.2 NC_003521.1 + 216383 0.68 0.967201
Target:  5'- aGGGcugcCUcGGgcGUCCAC--GGGACUCCg -3'
miRNA:   3'- -CCUa---GA-CCuuCAGGUGguCCCUGAGG- -5'
13992 5' -54.2 NC_003521.1 + 215438 0.72 0.82412
Target:  5'- cGGGUCUGGGAG-----CAGGGugUCCg -3'
miRNA:   3'- -CCUAGACCUUCaggugGUCCCugAGG- -5'
13992 5' -54.2 NC_003521.1 + 211593 0.66 0.982037
Target:  5'- ---gCUGGAGGcCCAgUAGaGGAuCUCCa -3'
miRNA:   3'- ccuaGACCUUCaGGUgGUC-CCU-GAGG- -5'
13992 5' -54.2 NC_003521.1 + 207807 0.69 0.924186
Target:  5'- cGGcgCUGGucaagcuggccgaGAGccugcggggcuucaUCCGCCAGGG-CUCCu -3'
miRNA:   3'- -CCuaGACC-------------UUC--------------AGGUGGUCCCuGAGG- -5'
13992 5' -54.2 NC_003521.1 + 206016 0.66 0.982037
Target:  5'- cGAUCUGGAAcaCUGCCAGaauGACUUCu -3'
miRNA:   3'- cCUAGACCUUcaGGUGGUCc--CUGAGG- -5'
13992 5' -54.2 NC_003521.1 + 205200 0.67 0.972875
Target:  5'- aGGGUCcGGAGGcCCGuCCAGGGcCg-- -3'
miRNA:   3'- -CCUAGaCCUUCaGGU-GGUCCCuGagg -5'
13992 5' -54.2 NC_003521.1 + 204243 0.69 0.945276
Target:  5'- aGGggCUGGAGGaUCAC--GGGACUCUc -3'
miRNA:   3'- -CCuaGACCUUCaGGUGguCCCUGAGG- -5'
13992 5' -54.2 NC_003521.1 + 198284 0.71 0.884418
Target:  5'- gGGcGUCgcGGAGGaCCGCUgGGGGGCUCCg -3'
miRNA:   3'- -CC-UAGa-CCUUCaGGUGG-UCCCUGAGG- -5'
13992 5' -54.2 NC_003521.1 + 196775 1.15 0.003096
Target:  5'- cGGAUCUGGAAGUCCACCAGGGACUCCa -3'
miRNA:   3'- -CCUAGACCUUCAGGUGGUCCCUGAGG- -5'
13992 5' -54.2 NC_003521.1 + 195583 0.66 0.988652
Target:  5'- gGGGUCaGGcccGUCUGCCGGGcGGC-CCu -3'
miRNA:   3'- -CCUAGaCCuu-CAGGUGGUCC-CUGaGG- -5'
13992 5' -54.2 NC_003521.1 + 195091 0.66 0.983912
Target:  5'- aGGGUCUcGGccAGUCCGUCGcGGGGgUCCu -3'
miRNA:   3'- -CCUAGA-CCu-UCAGGUGGU-CCCUgAGG- -5'
13992 5' -54.2 NC_003521.1 + 186514 0.79 0.490542
Target:  5'- gGGAUCUcGGgcGgugucgCCAgCGGGGGCUCCg -3'
miRNA:   3'- -CCUAGA-CCuuCa-----GGUgGUCCCUGAGG- -5'
13992 5' -54.2 NC_003521.1 + 181160 0.78 0.551505
Target:  5'- uGGGUCUccgucuccagauagaGGGcgaagcgcacgaAGUCCACCcGGGGCUCCa -3'
miRNA:   3'- -CCUAGA---------------CCU------------UCAGGUGGuCCCUGAGG- -5'
13992 5' -54.2 NC_003521.1 + 176855 0.68 0.953437
Target:  5'- aGGAUCUGGuuauGGcgCCgcGCCAGcaGCUCCa -3'
miRNA:   3'- -CCUAGACCu---UCa-GG--UGGUCccUGAGG- -5'
13992 5' -54.2 NC_003521.1 + 176729 0.68 0.967201
Target:  5'- --uUCUGGAAGcCCGCCuccaggccGGGCUCg -3'
miRNA:   3'- ccuAGACCUUCaGGUGGuc------CCUGAGg -5'
13992 5' -54.2 NC_003521.1 + 172764 0.73 0.762642
Target:  5'- cGGcauUCUGGcuG-CCACCGGGGGCgCCg -3'
miRNA:   3'- -CCu--AGACCuuCaGGUGGUCCCUGaGG- -5'
13992 5' -54.2 NC_003521.1 + 172207 0.67 0.970135
Target:  5'- gGGcgCccaGGAAGUCCACgGGGGugGCaCCg -3'
miRNA:   3'- -CCuaGa--CCUUCAGGUGgUCCC--UGaGG- -5'
13992 5' -54.2 NC_003521.1 + 167113 0.67 0.970135
Target:  5'- gGGA-CUGaGGAGccUCC-CUGGGGACUUCg -3'
miRNA:   3'- -CCUaGAC-CUUC--AGGuGGUCCCUGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.