miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13997 3' -52.3 NC_003521.1 + 40972 0.66 0.995658
Target:  5'- gACGggccccggGGGGACGCg-GaGGAGGGGGGCu -3'
miRNA:   3'- -UGCaa------CCUCUGUGgaC-CUUUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 103080 0.66 0.995658
Target:  5'- gGCGagGGcuGCugCUGGGgaugcgAAGGGGGCg -3'
miRNA:   3'- -UGCaaCCucUGugGACCU------UUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 651 0.66 0.995658
Target:  5'- gACGggccccggGGGGACGCg-GaGGAGGGGGGCu -3'
miRNA:   3'- -UGCaa------CCUCUGUGgaC-CUUUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 112047 0.66 0.995658
Target:  5'- cGCGUacUGc-GACGCCUGcu-GGAGGACg -3'
miRNA:   3'- -UGCA--ACcuCUGUGGACcuuUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 212926 0.66 0.995658
Target:  5'- ----aGGAGGCGCUgu--AAGAGGACa -3'
miRNA:   3'- ugcaaCCUCUGUGGaccuUUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 35922 0.66 0.995658
Target:  5'- ---cUGGuGGGCGCCUGGuccucaacGGGGACg -3'
miRNA:   3'- ugcaACC-UCUGUGGACCuuu-----CUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 86316 0.66 0.994959
Target:  5'- -gGUUGGccgccaGCACCUGGAugcuGGAGGuCu -3'
miRNA:   3'- ugCAACCuc----UGUGGACCUu---UCUCCuG- -5'
13997 3' -52.3 NC_003521.1 + 177977 0.66 0.994884
Target:  5'- -aGgcGGGGcACACCUGGGgcggugcGGGuAGGGCg -3'
miRNA:   3'- ugCaaCCUC-UGUGGACCU-------UUC-UCCUG- -5'
13997 3' -52.3 NC_003521.1 + 156678 0.66 0.994732
Target:  5'- gACG-UGGAGACAUCUucgcgcucggGGAAaaggugcuggccggGGAGGAg -3'
miRNA:   3'- -UGCaACCUCUGUGGA----------CCUU--------------UCUCCUg -5'
13997 3' -52.3 NC_003521.1 + 108102 0.66 0.994171
Target:  5'- aGCGcUUGGGGA-ACUUGGGcauGGGGGCu -3'
miRNA:   3'- -UGC-AACCUCUgUGGACCUuu-CUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 34330 0.66 0.994171
Target:  5'- aGCGUUGGAagcGGCGCa-GGgcGGAGGcCg -3'
miRNA:   3'- -UGCAACCU---CUGUGgaCCuuUCUCCuG- -5'
13997 3' -52.3 NC_003521.1 + 164801 0.66 0.994171
Target:  5'- uCGUcGGGGACGaucccggagcgcCCgcggGGGAGGAGGAa -3'
miRNA:   3'- uGCAaCCUCUGU------------GGa---CCUUUCUCCUg -5'
13997 3' -52.3 NC_003521.1 + 138604 0.66 0.993288
Target:  5'- -aGggGGAGAUGC--GGAGGGAGGAa -3'
miRNA:   3'- ugCaaCCUCUGUGgaCCUUUCUCCUg -5'
13997 3' -52.3 NC_003521.1 + 59646 0.66 0.993003
Target:  5'- gGCGUUGGuGcggcagacgcuggcGCGCCUGG-AGGAGcucaGACg -3'
miRNA:   3'- -UGCAACCuC--------------UGUGGACCuUUCUC----CUG- -5'
13997 3' -52.3 NC_003521.1 + 13651 0.66 0.9923
Target:  5'- gGCGgcGGAGGCgggagaagagGCUcGGAGAGGGuGGCg -3'
miRNA:   3'- -UGCaaCCUCUG----------UGGaCCUUUCUC-CUG- -5'
13997 3' -52.3 NC_003521.1 + 172434 0.66 0.9923
Target:  5'- gGCGgaGGAGGaagacgACgaGGAGAGGGGAg -3'
miRNA:   3'- -UGCaaCCUCUg-----UGgaCCUUUCUCCUg -5'
13997 3' -52.3 NC_003521.1 + 111200 0.67 0.9912
Target:  5'- gACGgUGGGcugggcgauGGCGCC-GGAAAGuGGGCg -3'
miRNA:   3'- -UGCaACCU---------CUGUGGaCCUUUCuCCUG- -5'
13997 3' -52.3 NC_003521.1 + 169656 0.67 0.9912
Target:  5'- ---cUGGAGACGCCgaaGAGgcAGAGGAg -3'
miRNA:   3'- ugcaACCUCUGUGGac-CUU--UCUCCUg -5'
13997 3' -52.3 NC_003521.1 + 89657 0.67 0.98998
Target:  5'- ----aGGAcGGCACagaggaaGGAGAGAGGACa -3'
miRNA:   3'- ugcaaCCU-CUGUGga-----CCUUUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 235842 0.67 0.98998
Target:  5'- cGCGggaUGGugaGGACACCacacggGGAGGGAGG-Ca -3'
miRNA:   3'- -UGCa--ACC---UCUGUGGa-----CCUUUCUCCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.