Results 1 - 20 of 55 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13997 | 3' | -52.3 | NC_003521.1 | + | 103080 | 0.66 | 0.995658 |
Target: 5'- gGCGagGGcuGCugCUGGGgaugcgAAGGGGGCg -3' miRNA: 3'- -UGCaaCCucUGugGACCU------UUCUCCUG- -5' |
|||||||
13997 | 3' | -52.3 | NC_003521.1 | + | 40972 | 0.66 | 0.995658 |
Target: 5'- gACGggccccggGGGGACGCg-GaGGAGGGGGGCu -3' miRNA: 3'- -UGCaa------CCUCUGUGgaC-CUUUCUCCUG- -5' |
|||||||
13997 | 3' | -52.3 | NC_003521.1 | + | 212926 | 0.66 | 0.995658 |
Target: 5'- ----aGGAGGCGCUgu--AAGAGGACa -3' miRNA: 3'- ugcaaCCUCUGUGGaccuUUCUCCUG- -5' |
|||||||
13997 | 3' | -52.3 | NC_003521.1 | + | 35922 | 0.66 | 0.995658 |
Target: 5'- ---cUGGuGGGCGCCUGGuccucaacGGGGACg -3' miRNA: 3'- ugcaACC-UCUGUGGACCuuu-----CUCCUG- -5' |
|||||||
13997 | 3' | -52.3 | NC_003521.1 | + | 112047 | 0.66 | 0.995658 |
Target: 5'- cGCGUacUGc-GACGCCUGcu-GGAGGACg -3' miRNA: 3'- -UGCA--ACcuCUGUGGACcuuUCUCCUG- -5' |
|||||||
13997 | 3' | -52.3 | NC_003521.1 | + | 651 | 0.66 | 0.995658 |
Target: 5'- gACGggccccggGGGGACGCg-GaGGAGGGGGGCu -3' miRNA: 3'- -UGCaa------CCUCUGUGgaC-CUUUCUCCUG- -5' |
|||||||
13997 | 3' | -52.3 | NC_003521.1 | + | 86316 | 0.66 | 0.994959 |
Target: 5'- -gGUUGGccgccaGCACCUGGAugcuGGAGGuCu -3' miRNA: 3'- ugCAACCuc----UGUGGACCUu---UCUCCuG- -5' |
|||||||
13997 | 3' | -52.3 | NC_003521.1 | + | 177977 | 0.66 | 0.994884 |
Target: 5'- -aGgcGGGGcACACCUGGGgcggugcGGGuAGGGCg -3' miRNA: 3'- ugCaaCCUC-UGUGGACCU-------UUC-UCCUG- -5' |
|||||||
13997 | 3' | -52.3 | NC_003521.1 | + | 156678 | 0.66 | 0.994732 |
Target: 5'- gACG-UGGAGACAUCUucgcgcucggGGAAaaggugcuggccggGGAGGAg -3' miRNA: 3'- -UGCaACCUCUGUGGA----------CCUU--------------UCUCCUg -5' |
|||||||
13997 | 3' | -52.3 | NC_003521.1 | + | 164801 | 0.66 | 0.994171 |
Target: 5'- uCGUcGGGGACGaucccggagcgcCCgcggGGGAGGAGGAa -3' miRNA: 3'- uGCAaCCUCUGU------------GGa---CCUUUCUCCUg -5' |
|||||||
13997 | 3' | -52.3 | NC_003521.1 | + | 108102 | 0.66 | 0.994171 |
Target: 5'- aGCGcUUGGGGA-ACUUGGGcauGGGGGCu -3' miRNA: 3'- -UGC-AACCUCUgUGGACCUuu-CUCCUG- -5' |
|||||||
13997 | 3' | -52.3 | NC_003521.1 | + | 34330 | 0.66 | 0.994171 |
Target: 5'- aGCGUUGGAagcGGCGCa-GGgcGGAGGcCg -3' miRNA: 3'- -UGCAACCU---CUGUGgaCCuuUCUCCuG- -5' |
|||||||
13997 | 3' | -52.3 | NC_003521.1 | + | 138604 | 0.66 | 0.993288 |
Target: 5'- -aGggGGAGAUGC--GGAGGGAGGAa -3' miRNA: 3'- ugCaaCCUCUGUGgaCCUUUCUCCUg -5' |
|||||||
13997 | 3' | -52.3 | NC_003521.1 | + | 59646 | 0.66 | 0.993003 |
Target: 5'- gGCGUUGGuGcggcagacgcuggcGCGCCUGG-AGGAGcucaGACg -3' miRNA: 3'- -UGCAACCuC--------------UGUGGACCuUUCUC----CUG- -5' |
|||||||
13997 | 3' | -52.3 | NC_003521.1 | + | 13651 | 0.66 | 0.9923 |
Target: 5'- gGCGgcGGAGGCgggagaagagGCUcGGAGAGGGuGGCg -3' miRNA: 3'- -UGCaaCCUCUG----------UGGaCCUUUCUC-CUG- -5' |
|||||||
13997 | 3' | -52.3 | NC_003521.1 | + | 172434 | 0.66 | 0.9923 |
Target: 5'- gGCGgaGGAGGaagacgACgaGGAGAGGGGAg -3' miRNA: 3'- -UGCaaCCUCUg-----UGgaCCUUUCUCCUg -5' |
|||||||
13997 | 3' | -52.3 | NC_003521.1 | + | 169656 | 0.67 | 0.9912 |
Target: 5'- ---cUGGAGACGCCgaaGAGgcAGAGGAg -3' miRNA: 3'- ugcaACCUCUGUGGac-CUU--UCUCCUg -5' |
|||||||
13997 | 3' | -52.3 | NC_003521.1 | + | 111200 | 0.67 | 0.9912 |
Target: 5'- gACGgUGGGcugggcgauGGCGCC-GGAAAGuGGGCg -3' miRNA: 3'- -UGCaACCU---------CUGUGGaCCUUUCuCCUG- -5' |
|||||||
13997 | 3' | -52.3 | NC_003521.1 | + | 235842 | 0.67 | 0.98998 |
Target: 5'- cGCGggaUGGugaGGACACCacacggGGAGGGAGG-Ca -3' miRNA: 3'- -UGCa--ACC---UCUGUGGa-----CCUUUCUCCuG- -5' |
|||||||
13997 | 3' | -52.3 | NC_003521.1 | + | 89657 | 0.67 | 0.98998 |
Target: 5'- ----aGGAcGGCACagaggaaGGAGAGAGGACa -3' miRNA: 3'- ugcaaCCU-CUGUGga-----CCUUUCUCCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home