miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13997 3' -52.3 NC_003521.1 + 91317 0.67 0.989589
Target:  5'- uGCGUgugcgcgcGGGGGCACgcgcaggcgaggugCUGGucGGGAGGACg -3'
miRNA:   3'- -UGCAa-------CCUCUGUG--------------GACCu-UUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 48274 0.67 0.987146
Target:  5'- -aGagGGAGAagaCgGGAGAGAGGACg -3'
miRNA:   3'- ugCaaCCUCUgugGaCCUUUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 98228 0.67 0.987146
Target:  5'- gGCGUgGGAGGCGg--GGAGGcGGGGGCg -3'
miRNA:   3'- -UGCAaCCUCUGUggaCCUUU-CUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 187180 0.67 0.987146
Target:  5'- aACGUgcGGAGACggcccGCCUGcAucGGGGACa -3'
miRNA:   3'- -UGCAa-CCUCUG-----UGGACcUuuCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 65344 0.67 0.986989
Target:  5'- ---aUGGAGucauCAUCUGGAAAGAgaaagauGGACu -3'
miRNA:   3'- ugcaACCUCu---GUGGACCUUUCU-------CCUG- -5'
13997 3' -52.3 NC_003521.1 + 7148 0.67 0.985515
Target:  5'- cGCGgaGGAcGACgACgaGGAA-GAGGACa -3'
miRNA:   3'- -UGCaaCCU-CUG-UGgaCCUUuCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 173332 0.67 0.985515
Target:  5'- gACGaggucgGGAGugAcggaCCUcucgGGAAGGAGGACg -3'
miRNA:   3'- -UGCaa----CCUCugU----GGA----CCUUUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 186912 0.67 0.985515
Target:  5'- gACGUccaagGGGGGCGCCggUGGcgGGGGcGGCg -3'
miRNA:   3'- -UGCAa----CCUCUGUGG--ACCuuUCUC-CUG- -5'
13997 3' -52.3 NC_003521.1 + 90871 0.67 0.985515
Target:  5'- cACGgccgagGGGGACg---GGGAGGGGGACg -3'
miRNA:   3'- -UGCaa----CCUCUGuggaCCUUUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 77666 0.68 0.983731
Target:  5'- cCGUcgGGAGACAgCaGGccGGGGGGCa -3'
miRNA:   3'- uGCAa-CCUCUGUgGaCCuuUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 65225 0.68 0.983731
Target:  5'- gACGcaGGAGAUacuggccgGCCUGGAuccgcgcgcgcAAGAGGAa -3'
miRNA:   3'- -UGCaaCCUCUG--------UGGACCU-----------UUCUCCUg -5'
13997 3' -52.3 NC_003521.1 + 126753 0.68 0.983731
Target:  5'- uGCGUUGGGGACgacgaucuucGCCacguucaggcUGGucGAGGAGGAg -3'
miRNA:   3'- -UGCAACCUCUG----------UGG----------ACC--UUUCUCCUg -5'
13997 3' -52.3 NC_003521.1 + 200883 0.68 0.979669
Target:  5'- uACGcugcUGGAG-CugCUGGc-GGAGGACa -3'
miRNA:   3'- -UGCa---ACCUCuGugGACCuuUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 150024 0.68 0.977376
Target:  5'- -aGggGGGGGgGgCUGGGGAGGGGGg -3'
miRNA:   3'- ugCaaCCUCUgUgGACCUUUCUCCUg -5'
13997 3' -52.3 NC_003521.1 + 86550 0.68 0.977376
Target:  5'- aGCGUUGGAGcAgACCuucugccagaacUGGAGGcAGGGCa -3'
miRNA:   3'- -UGCAACCUC-UgUGG------------ACCUUUcUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 135260 0.68 0.974898
Target:  5'- cACGgcGGcGGACGCCgacGAcgAGGAGGACg -3'
miRNA:   3'- -UGCaaCC-UCUGUGGac-CU--UUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 4233 0.68 0.974898
Target:  5'- cCGggaGGAGG-ACCgagacgGGGAGGAGGACg -3'
miRNA:   3'- uGCaa-CCUCUgUGGa-----CCUUUCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 13831 0.69 0.967538
Target:  5'- cCGUcGGAaaGCACCUGGAAugugacgaccggaggGGAGGAUg -3'
miRNA:   3'- uGCAaCCUc-UGUGGACCUU---------------UCUCCUG- -5'
13997 3' -52.3 NC_003521.1 + 15529 0.69 0.962998
Target:  5'- gGCGgcaugUGGcGaACGCgCUGGGAAGAGGGg -3'
miRNA:   3'- -UGCa----ACCuC-UGUG-GACCUUUCUCCUg -5'
13997 3' -52.3 NC_003521.1 + 129870 0.69 0.959495
Target:  5'- gACGagUGGGuGACgGCCgGGGAGGAGGAg -3'
miRNA:   3'- -UGCa-ACCU-CUG-UGGaCCUUUCUCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.