miRNA display CGI


Results 1 - 20 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13999 5' -62 NC_003521.1 + 216551 0.65 0.820696
Target:  5'- uGGACcugCCGAgggaauccaggUCGCCGCCGauauaccgcccgaccGCCCGCu -3'
miRNA:   3'- -CCUGa--GGCU-----------GGCGGUGGCac-------------CGGGCG- -5'
13999 5' -62 NC_003521.1 + 72008 0.66 0.782219
Target:  5'- gGGGC-CCagcuucagGAUgCGCCG-CGUGGCCUGCa -3'
miRNA:   3'- -CCUGaGG--------CUG-GCGGUgGCACCGGGCG- -5'
13999 5' -62 NC_003521.1 + 113148 0.66 0.782219
Target:  5'- -cGCUCUGGacCCGCCGCCu--GCUCGCg -3'
miRNA:   3'- ccUGAGGCU--GGCGGUGGcacCGGGCG- -5'
13999 5' -62 NC_003521.1 + 240536 0.66 0.798115
Target:  5'- uGGACgcacacacuccgaUCCGGCCuCCGCUGcgGGuCCCGg -3'
miRNA:   3'- -CCUG-------------AGGCUGGcGGUGGCa-CC-GGGCg -5'
13999 5' -62 NC_003521.1 + 30629 0.66 0.790639
Target:  5'- -uAUUCaaACCGCCACCGgcGGCgCGCc -3'
miRNA:   3'- ccUGAGgcUGGCGGUGGCa-CCGgGCG- -5'
13999 5' -62 NC_003521.1 + 129820 0.66 0.790639
Target:  5'- uGGuGCUgggCCGcCUGCUGCUGgGGCCCGUg -3'
miRNA:   3'- -CC-UGA---GGCuGGCGGUGGCaCCGGGCG- -5'
13999 5' -62 NC_003521.1 + 83920 0.66 0.78137
Target:  5'- -cGCUCCGGCCcgucgccccccguGCCAUCG-GGCagcggCCGCc -3'
miRNA:   3'- ccUGAGGCUGG-------------CGGUGGCaCCG-----GGCG- -5'
13999 5' -62 NC_003521.1 + 162830 0.66 0.782219
Target:  5'- uGGCUCUG-CgCGaCCAUCGUGcagaacggcgaGCCCGCg -3'
miRNA:   3'- cCUGAGGCuG-GC-GGUGGCAC-----------CGGGCG- -5'
13999 5' -62 NC_003521.1 + 50258 0.66 0.790639
Target:  5'- cGAUcacgCCGuACUGCCGCUGcagccgGGUCCGCc -3'
miRNA:   3'- cCUGa---GGC-UGGCGGUGGCa-----CCGGGCG- -5'
13999 5' -62 NC_003521.1 + 142705 0.66 0.798115
Target:  5'- cGGACUCCG--CGCCGCgaguccucggacaUGUGGUCCu- -3'
miRNA:   3'- -CCUGAGGCugGCGGUG-------------GCACCGGGcg -5'
13999 5' -62 NC_003521.1 + 68740 0.66 0.773685
Target:  5'- cGGACUUCaucacGCCGCCGCUGacGGUCCu- -3'
miRNA:   3'- -CCUGAGGc----UGGCGGUGGCa-CCGGGcg -5'
13999 5' -62 NC_003521.1 + 239366 0.66 0.798939
Target:  5'- gGGAUgcCCGuguGCUGCCACCGgcggcgcaGCUCGCg -3'
miRNA:   3'- -CCUGa-GGC---UGGCGGUGGCac------CGGGCG- -5'
13999 5' -62 NC_003521.1 + 85488 0.66 0.773685
Target:  5'- cGGuGC-CCGcGCCcCCGCCG-GGaCCCGCg -3'
miRNA:   3'- -CC-UGaGGC-UGGcGGUGGCaCC-GGGCG- -5'
13999 5' -62 NC_003521.1 + 215519 0.66 0.782219
Target:  5'- uGGAagaCGACCGCC-CCGUagguguacacGGUCaCGCg -3'
miRNA:   3'- -CCUgagGCUGGCGGuGGCA----------CCGG-GCG- -5'
13999 5' -62 NC_003521.1 + 224088 0.66 0.790639
Target:  5'- cGGGCgcgcgcgCCGGCgGUCGCCGaacucGCCgCGCa -3'
miRNA:   3'- -CCUGa------GGCUGgCGGUGGCac---CGG-GCG- -5'
13999 5' -62 NC_003521.1 + 202630 0.66 0.798939
Target:  5'- cGACcUCGACCGCgagCACUGggagcGGCcCCGCu -3'
miRNA:   3'- cCUGaGGCUGGCG---GUGGCa----CCG-GGCG- -5'
13999 5' -62 NC_003521.1 + 5683 0.66 0.795634
Target:  5'- cGGGCgcccgUCCGcggggaacgggcGCCGUCACCGggguuauguguacGGCCCGg -3'
miRNA:   3'- -CCUG-----AGGC------------UGGCGGUGGCa------------CCGGGCg -5'
13999 5' -62 NC_003521.1 + 93145 0.66 0.785601
Target:  5'- gGGAgaccacCUCCGGCCGUCgcucgacgucccucuACCGgGGCUCGa -3'
miRNA:   3'- -CCU------GAGGCUGGCGG---------------UGGCaCCGGGCg -5'
13999 5' -62 NC_003521.1 + 152311 0.66 0.790639
Target:  5'- gGGACUCCauuucgaaaucGAUCGaCUcguUCG-GGCCCGCg -3'
miRNA:   3'- -CCUGAGG-----------CUGGC-GGu--GGCaCCGGGCG- -5'
13999 5' -62 NC_003521.1 + 73908 0.66 0.782219
Target:  5'- uGGGCcCCGucuaccuCUGCC-CCGUG-CCCGUg -3'
miRNA:   3'- -CCUGaGGCu------GGCGGuGGCACcGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.