miRNA display CGI


Results 1 - 20 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13999 5' -62 NC_003521.1 + 167 0.79 0.183446
Target:  5'- cGGCUCCGGCCGCCGCUucGGCCUcccuGCa -3'
miRNA:   3'- cCUGAGGCUGGCGGUGGcaCCGGG----CG- -5'
13999 5' -62 NC_003521.1 + 182 0.67 0.756304
Target:  5'- cGGC-CCGAaacaCGuCCgACCGgccGGCCCGCc -3'
miRNA:   3'- cCUGaGGCUg---GC-GG-UGGCa--CCGGGCG- -5'
13999 5' -62 NC_003521.1 + 919 0.67 0.726845
Target:  5'- -uACUCCaaagacaacuagaaGGCCGCUGCgacuggaaCGUGGUCCGCu -3'
miRNA:   3'- ccUGAGG--------------CUGGCGGUG--------GCACCGGGCG- -5'
13999 5' -62 NC_003521.1 + 1138 0.67 0.755425
Target:  5'- gGGACa-CGaACCGCUGCCGUccccgggagccacGGCgCCGCc -3'
miRNA:   3'- -CCUGagGC-UGGCGGUGGCA-------------CCG-GGCG- -5'
13999 5' -62 NC_003521.1 + 2207 0.68 0.683655
Target:  5'- cGGACggCCGGCCcuaCGCCcaGGCCCuGCu -3'
miRNA:   3'- -CCUGa-GGCUGGcg-GUGGcaCCGGG-CG- -5'
13999 5' -62 NC_003521.1 + 2403 0.66 0.798939
Target:  5'- cGACcUCGACCGCgagCACUGggagcGGCcCCGCu -3'
miRNA:   3'- cCUGaGGCUGGCG---GUGGCa----CCG-GGCG- -5'
13999 5' -62 NC_003521.1 + 4323 0.7 0.54737
Target:  5'- gGGGCUcgaCCGuccaugccuggcgccACCGCCGCCGgcGGUUCGCu -3'
miRNA:   3'- -CCUGA---GGC---------------UGGCGGUGGCa-CCGGGCG- -5'
13999 5' -62 NC_003521.1 + 5221 0.67 0.72049
Target:  5'- cGGGCUCCGcccgaguCCGCCucUCGUccuCCCGCa -3'
miRNA:   3'- -CCUGAGGCu------GGCGGu-GGCAcc-GGGCG- -5'
13999 5' -62 NC_003521.1 + 5340 0.67 0.738553
Target:  5'- cGACUCCGGCgauaGUgGuaagcCCGUgagagGGCCCGCg -3'
miRNA:   3'- cCUGAGGCUGg---CGgU-----GGCA-----CCGGGCG- -5'
13999 5' -62 NC_003521.1 + 5683 0.66 0.795634
Target:  5'- cGGGCgcccgUCCGcggggaacgggcGCCGUCACCGggguuauguguacGGCCCGg -3'
miRNA:   3'- -CCUG-----AGGC------------UGGCGGUGGCa------------CCGGGCg -5'
13999 5' -62 NC_003521.1 + 5823 0.69 0.608678
Target:  5'- cGGAggCCaggggGACCGCUACCGcUGGgaCCGCa -3'
miRNA:   3'- -CCUgaGG-----CUGGCGGUGGC-ACCg-GGCG- -5'
13999 5' -62 NC_003521.1 + 6167 0.66 0.798939
Target:  5'- cGGCUCCGGCUccugGCUGuuG-GGUCCGUc -3'
miRNA:   3'- cCUGAGGCUGG----CGGUggCaCCGGGCG- -5'
13999 5' -62 NC_003521.1 + 7952 0.68 0.683655
Target:  5'- --cCUCCaGAUCGCCgcggugucgcgGCCGggagGGUCCGCg -3'
miRNA:   3'- ccuGAGG-CUGGCGG-----------UGGCa---CCGGGCG- -5'
13999 5' -62 NC_003521.1 + 11734 0.72 0.447026
Target:  5'- cGGCgagUCGGCCGUCAUCGacgGGCCCGa -3'
miRNA:   3'- cCUGa--GGCUGGCGGUGGCa--CCGGGCg -5'
13999 5' -62 NC_003521.1 + 11831 0.66 0.782219
Target:  5'- -aGCUCCGugcuGCCGguCCugCGccGCCCGCg -3'
miRNA:   3'- ccUGAGGC----UGGC--GGugGCacCGGGCG- -5'
13999 5' -62 NC_003521.1 + 13216 0.66 0.790639
Target:  5'- uGGAgggCCGACCGgCGCCcaaGCCUGCc -3'
miRNA:   3'- -CCUga-GGCUGGCgGUGGcacCGGGCG- -5'
13999 5' -62 NC_003521.1 + 13743 0.66 0.815152
Target:  5'- uGGCUCgGACCGUCAuCUGUcucgacugcGGUCCGa -3'
miRNA:   3'- cCUGAGgCUGGCGGU-GGCA---------CCGGGCg -5'
13999 5' -62 NC_003521.1 + 13873 0.68 0.683655
Target:  5'- cGGGCggCG-CCGCCauggauuucGCCGgggGGCCCGg -3'
miRNA:   3'- -CCUGagGCuGGCGG---------UGGCa--CCGGGCg -5'
13999 5' -62 NC_003521.1 + 13924 0.73 0.414276
Target:  5'- cGGAggCCGcGCUgGCCGCCGUGGugccCCCGCa -3'
miRNA:   3'- -CCUgaGGC-UGG-CGGUGGCACC----GGGCG- -5'
13999 5' -62 NC_003521.1 + 14677 0.7 0.571347
Target:  5'- cGACgCCGAgUGCCGCCGcUGGUgguggggcauCCGCg -3'
miRNA:   3'- cCUGaGGCUgGCGGUGGC-ACCG----------GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.