miRNA display CGI


Results 1 - 20 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13999 5' -62 NC_003521.1 + 193244 1.12 0.001051
Target:  5'- aGGACUCCGACCGCCACCGUGGCCCGCu -3'
miRNA:   3'- -CCUGAGGCUGGCGGUGGCACCGGGCG- -5'
13999 5' -62 NC_003521.1 + 172764 0.82 0.126003
Target:  5'- cGGcAUUCUGGCUGCCACCGggGGCgCCGCg -3'
miRNA:   3'- -CC-UGAGGCUGGCGGUGGCa-CCG-GGCG- -5'
13999 5' -62 NC_003521.1 + 154616 0.81 0.129043
Target:  5'- cGGCgugCCG-CCGCCcuucgccuccACCGUGGCCCGCg -3'
miRNA:   3'- cCUGa--GGCuGGCGG----------UGGCACCGGGCG- -5'
13999 5' -62 NC_003521.1 + 221689 0.8 0.167215
Target:  5'- aGGcACUCCGACUGguaCACCGgcGGCCCGCc -3'
miRNA:   3'- -CC-UGAGGCUGGCg--GUGGCa-CCGGGCG- -5'
13999 5' -62 NC_003521.1 + 200395 0.79 0.183446
Target:  5'- cGGCUCCGGCCGCCGCUucGGCCUcccuGCa -3'
miRNA:   3'- cCUGAGGCUGGCGGUGGcaCCGGG----CG- -5'
13999 5' -62 NC_003521.1 + 167 0.79 0.183446
Target:  5'- cGGCUCCGGCCGCCGCUucGGCCUcccuGCa -3'
miRNA:   3'- cCUGAGGCUGGCGGUGGcaCCGGG----CG- -5'
13999 5' -62 NC_003521.1 + 240716 0.79 0.183446
Target:  5'- cGGCUCCGGCCGCCGCUucGGCCUcccuGCa -3'
miRNA:   3'- cCUGAGGCUGGCGGUGGcaCCGGG----CG- -5'
13999 5' -62 NC_003521.1 + 125196 0.78 0.201054
Target:  5'- uGGACUCCauGGCCGCCAUgGUGGCggcggcaaCGCg -3'
miRNA:   3'- -CCUGAGG--CUGGCGGUGgCACCGg-------GCG- -5'
13999 5' -62 NC_003521.1 + 153066 0.78 0.205679
Target:  5'- aGGcCUCCu-CCGCCGCCGgGGCCCGg -3'
miRNA:   3'- -CCuGAGGcuGGCGGUGGCaCCGGGCg -5'
13999 5' -62 NC_003521.1 + 194407 0.78 0.225112
Target:  5'- -cGCUUCGcCCGUCGCCGcuuccUGGCCCGCg -3'
miRNA:   3'- ccUGAGGCuGGCGGUGGC-----ACCGGGCG- -5'
13999 5' -62 NC_003521.1 + 135015 0.78 0.225112
Target:  5'- ---aUCUGGCUGCCgggcACCGUGGCCUGCg -3'
miRNA:   3'- ccugAGGCUGGCGG----UGGCACCGGGCG- -5'
13999 5' -62 NC_003521.1 + 77168 0.77 0.240691
Target:  5'- -aGCUCCGACagcaccgagaCGCgCACCGaGGCCCGCa -3'
miRNA:   3'- ccUGAGGCUG----------GCG-GUGGCaCCGGGCG- -5'
13999 5' -62 NC_003521.1 + 143598 0.77 0.257159
Target:  5'- cGGACUgCUGACgGCCACCGgcugcuGCCUGCu -3'
miRNA:   3'- -CCUGA-GGCUGgCGGUGGCac----CGGGCG- -5'
13999 5' -62 NC_003521.1 + 14748 0.76 0.268643
Target:  5'- uGACgggCCGGCCGCgGCCGgGGCgCGCc -3'
miRNA:   3'- cCUGa--GGCUGGCGgUGGCaCCGgGCG- -5'
13999 5' -62 NC_003521.1 + 94961 0.76 0.292845
Target:  5'- cGGCgCCGcCCGCCGCCG-GGCCCa- -3'
miRNA:   3'- cCUGaGGCuGGCGGUGGCaCCGGGcg -5'
13999 5' -62 NC_003521.1 + 74700 0.76 0.292845
Target:  5'- cGACcugCCGGCCGCC-CUGaagcaGGCCCGCg -3'
miRNA:   3'- cCUGa--GGCUGGCGGuGGCa----CCGGGCG- -5'
13999 5' -62 NC_003521.1 + 130139 0.75 0.299156
Target:  5'- cGGCgccgCCGcuGCCGCCACCGagcgcuacgcccUGGCCUGCc -3'
miRNA:   3'- cCUGa---GGC--UGGCGGUGGC------------ACCGGGCG- -5'
13999 5' -62 NC_003521.1 + 37461 0.75 0.299156
Target:  5'- uGGGCUCgCGcGCgGgCCACCGUGGUgCCGCa -3'
miRNA:   3'- -CCUGAG-GC-UGgC-GGUGGCACCG-GGCG- -5'
13999 5' -62 NC_003521.1 + 148934 0.75 0.301709
Target:  5'- gGGGgUCCGuccguccguggucgcACCGCCGCCGccguccUGGUCCGCc -3'
miRNA:   3'- -CCUgAGGC---------------UGGCGGUGGC------ACCGGGCG- -5'
13999 5' -62 NC_003521.1 + 100477 0.75 0.305571
Target:  5'- uGACggCCGuugcuACCGCCGCCagGUGGCaCCGCg -3'
miRNA:   3'- cCUGa-GGC-----UGGCGGUGG--CACCG-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.