miRNA display CGI


Results 1 - 20 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13999 5' -62 NC_003521.1 + 221689 0.8 0.167215
Target:  5'- aGGcACUCCGACUGguaCACCGgcGGCCCGCc -3'
miRNA:   3'- -CC-UGAGGCUGGCg--GUGGCa-CCGGGCG- -5'
13999 5' -62 NC_003521.1 + 18270 0.73 0.406322
Target:  5'- gGGAC-CUGcCCGCgACgGgagGGCCCGCa -3'
miRNA:   3'- -CCUGaGGCuGGCGgUGgCa--CCGGGCG- -5'
13999 5' -62 NC_003521.1 + 59619 0.73 0.390704
Target:  5'- cGGCcCCGGCgGCgACCGcGGCUCGCa -3'
miRNA:   3'- cCUGaGGCUGgCGgUGGCaCCGGGCG- -5'
13999 5' -62 NC_003521.1 + 116669 0.73 0.390704
Target:  5'- --uCUCCaGCCGCCGCUGUuGCCCGUc -3'
miRNA:   3'- ccuGAGGcUGGCGGUGGCAcCGGGCG- -5'
13999 5' -62 NC_003521.1 + 165922 0.74 0.383044
Target:  5'- cGACUCCaccGCCGCCACCGU--CUCGCg -3'
miRNA:   3'- cCUGAGGc--UGGCGGUGGCAccGGGCG- -5'
13999 5' -62 NC_003521.1 + 142287 0.74 0.383044
Target:  5'- gGGAC-CCG-CCGCCGCUGcagcGGCCCaGCc -3'
miRNA:   3'- -CCUGaGGCuGGCGGUGGCa---CCGGG-CG- -5'
13999 5' -62 NC_003521.1 + 118315 0.74 0.375484
Target:  5'- cGGC-CUGcCCGCCGCCGcguUGGCCCuGCa -3'
miRNA:   3'- cCUGaGGCuGGCGGUGGC---ACCGGG-CG- -5'
13999 5' -62 NC_003521.1 + 196054 0.74 0.368026
Target:  5'- aGGGCcagcaCCGGCCGCCuuCCGcGGUCCGUc -3'
miRNA:   3'- -CCUGa----GGCUGGCGGu-GGCaCCGGGCG- -5'
13999 5' -62 NC_003521.1 + 223813 0.74 0.353417
Target:  5'- cGGGCcugcgCCG-CCGCCACCGcggGcGCCUGCu -3'
miRNA:   3'- -CCUGa----GGCuGGCGGUGGCa--C-CGGGCG- -5'
13999 5' -62 NC_003521.1 + 100477 0.75 0.305571
Target:  5'- uGACggCCGuugcuACCGCCGCCagGUGGCaCCGCg -3'
miRNA:   3'- cCUGa-GGC-----UGGCGGUGG--CACCG-GGCG- -5'
13999 5' -62 NC_003521.1 + 33667 0.75 0.305571
Target:  5'- gGGAUccagCGACCG--GCCGUGGCCCGCa -3'
miRNA:   3'- -CCUGag--GCUGGCggUGGCACCGGGCG- -5'
13999 5' -62 NC_003521.1 + 130139 0.75 0.299156
Target:  5'- cGGCgccgCCGcuGCCGCCACCGagcgcuacgcccUGGCCUGCc -3'
miRNA:   3'- cCUGa---GGC--UGGCGGUGGC------------ACCGGGCG- -5'
13999 5' -62 NC_003521.1 + 37461 0.75 0.299156
Target:  5'- uGGGCUCgCGcGCgGgCCACCGUGGUgCCGCa -3'
miRNA:   3'- -CCUGAG-GC-UGgC-GGUGGCACCG-GGCG- -5'
13999 5' -62 NC_003521.1 + 143598 0.77 0.257159
Target:  5'- cGGACUgCUGACgGCCACCGgcugcuGCCUGCu -3'
miRNA:   3'- -CCUGA-GGCUGgCGGUGGCac----CGGGCG- -5'
13999 5' -62 NC_003521.1 + 77168 0.77 0.240691
Target:  5'- -aGCUCCGACagcaccgagaCGCgCACCGaGGCCCGCa -3'
miRNA:   3'- ccUGAGGCUG----------GCG-GUGGCaCCGGGCG- -5'
13999 5' -62 NC_003521.1 + 194407 0.78 0.225112
Target:  5'- -cGCUUCGcCCGUCGCCGcuuccUGGCCCGCg -3'
miRNA:   3'- ccUGAGGCuGGCGGUGGC-----ACCGGGCG- -5'
13999 5' -62 NC_003521.1 + 153066 0.78 0.205679
Target:  5'- aGGcCUCCu-CCGCCGCCGgGGCCCGg -3'
miRNA:   3'- -CCuGAGGcuGGCGGUGGCaCCGGGCg -5'
13999 5' -62 NC_003521.1 + 125196 0.78 0.201054
Target:  5'- uGGACUCCauGGCCGCCAUgGUGGCggcggcaaCGCg -3'
miRNA:   3'- -CCUGAGG--CUGGCGGUGgCACCGg-------GCG- -5'
13999 5' -62 NC_003521.1 + 200395 0.79 0.183446
Target:  5'- cGGCUCCGGCCGCCGCUucGGCCUcccuGCa -3'
miRNA:   3'- cCUGAGGCUGGCGGUGGcaCCGGG----CG- -5'
13999 5' -62 NC_003521.1 + 172764 0.82 0.126003
Target:  5'- cGGcAUUCUGGCUGCCACCGggGGCgCCGCg -3'
miRNA:   3'- -CC-UGAGGCUGGCGGUGGCa-CCG-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.