miRNA display CGI


Results 1 - 20 of 457 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14000 5' -53.5 NC_003521.1 + 149767 0.66 0.986797
Target:  5'- gGCGGCCGCG-CGGUaCGCcucAACGccacggcGUUCCg -3'
miRNA:   3'- -CGUCGGCGCuGUUA-GCG---UUGU-------CAGGG- -5'
14000 5' -53.5 NC_003521.1 + 90079 0.66 0.986952
Target:  5'- gGCGGgCGCGcACGcgCGCGguaaaaaagaaGCGGUgCCu -3'
miRNA:   3'- -CGUCgGCGC-UGUuaGCGU-----------UGUCAgGG- -5'
14000 5' -53.5 NC_003521.1 + 142771 0.66 0.989774
Target:  5'- aGCGuCCGCGGCGgcGUCGU--CGGUgCCa -3'
miRNA:   3'- -CGUcGGCGCUGU--UAGCGuuGUCAgGG- -5'
14000 5' -53.5 NC_003521.1 + 228127 0.66 0.988001
Target:  5'- aGCAGCCGuCGGuccuggaguagaacCGGUCGCGGCGca-CCa -3'
miRNA:   3'- -CGUCGGC-GCU--------------GUUAGCGUUGUcagGG- -5'
14000 5' -53.5 NC_003521.1 + 218625 0.66 0.98857
Target:  5'- cCAGCgCGCGGCGGUaagcggccacggccgGCGGCGccucGUCCCu -3'
miRNA:   3'- cGUCG-GCGCUGUUAg--------------CGUUGU----CAGGG- -5'
14000 5' -53.5 NC_003521.1 + 186625 0.66 0.992094
Target:  5'- cGCGGCgGCGGUggUgGCGGCAaGUCg- -3'
miRNA:   3'- -CGUCGgCGCUGuuAgCGUUGU-CAGgg -5'
14000 5' -53.5 NC_003521.1 + 36004 0.66 0.986952
Target:  5'- aGCGaCgGCGACGGagGUGGCGGcCCCa -3'
miRNA:   3'- -CGUcGgCGCUGUUagCGUUGUCaGGG- -5'
14000 5' -53.5 NC_003521.1 + 111382 0.66 0.988429
Target:  5'- cUAGCgGCGACGgaggggacgcGcUGCAGCGGcUCCCc -3'
miRNA:   3'- cGUCGgCGCUGU----------UaGCGUUGUC-AGGG- -5'
14000 5' -53.5 NC_003521.1 + 5523 0.66 0.988429
Target:  5'- aGCAGCaGCGACGGUgaCGGCAG-CCg -3'
miRNA:   3'- -CGUCGgCGCUGUUAgcGUUGUCaGGg -5'
14000 5' -53.5 NC_003521.1 + 131071 0.66 0.989645
Target:  5'- cGCGGUgGCGGCGAcCGCGGCucgcgcgGGcUCCg -3'
miRNA:   3'- -CGUCGgCGCUGUUaGCGUUG-------UC-AGGg -5'
14000 5' -53.5 NC_003521.1 + 55833 0.66 0.988288
Target:  5'- cGCAG-CGCGGCAGgccggccUUGCAcaGGUCCa -3'
miRNA:   3'- -CGUCgGCGCUGUU-------AGCGUugUCAGGg -5'
14000 5' -53.5 NC_003521.1 + 78153 0.66 0.986952
Target:  5'- gGCGGCCGCGAaCGAg-GC-ACGaUCCUg -3'
miRNA:   3'- -CGUCGGCGCU-GUUagCGuUGUcAGGG- -5'
14000 5' -53.5 NC_003521.1 + 114560 0.66 0.988429
Target:  5'- cGCGGuuGCGAgAuccCGCuGCAGUaCUCg -3'
miRNA:   3'- -CGUCggCGCUgUua-GCGuUGUCA-GGG- -5'
14000 5' -53.5 NC_003521.1 + 214648 0.66 0.989645
Target:  5'- aGCA-CCGUGAUGgccGUCuccagcaGCAGCAGUCCg -3'
miRNA:   3'- -CGUcGGCGCUGU---UAG-------CGUUGUCAGGg -5'
14000 5' -53.5 NC_003521.1 + 43902 0.66 0.986952
Target:  5'- uGCuGCCgGUGACGAcgCGCucAACuuucGUCCCg -3'
miRNA:   3'- -CGuCGG-CGCUGUUa-GCG--UUGu---CAGGG- -5'
14000 5' -53.5 NC_003521.1 + 30225 0.66 0.988429
Target:  5'- cCGGCCGuUGGC-GUCGCGcuGCAGgUCCg -3'
miRNA:   3'- cGUCGGC-GCUGuUAGCGU--UGUC-AGGg -5'
14000 5' -53.5 NC_003521.1 + 36812 0.66 0.989774
Target:  5'- gGCAgGCCGUGAuCAcgCGCcACGGgCCg -3'
miRNA:   3'- -CGU-CGGCGCU-GUuaGCGuUGUCaGGg -5'
14000 5' -53.5 NC_003521.1 + 28270 0.66 0.986952
Target:  5'- aCAGCgGCGGCGAUgaCAGCAG-CCa -3'
miRNA:   3'- cGUCGgCGCUGUUAgcGUUGUCaGGg -5'
14000 5' -53.5 NC_003521.1 + 206591 0.66 0.989774
Target:  5'- -aGGCCcCGGCuAUCGCGACAuGUCg- -3'
miRNA:   3'- cgUCGGcGCUGuUAGCGUUGU-CAGgg -5'
14000 5' -53.5 NC_003521.1 + 145375 0.66 0.988429
Target:  5'- aCGGgCGCGAgcCGGUgCGCGACGG-CCUg -3'
miRNA:   3'- cGUCgGCGCU--GUUA-GCGUUGUCaGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.