miRNA display CGI


Results 1 - 20 of 457 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14000 5' -53.5 NC_003521.1 + 202 0.71 0.880794
Target:  5'- cGCGGCaaGCGACAcgCGCAACcuugcgccaauuuAGUgCCCc -3'
miRNA:   3'- -CGUCGg-CGCUGUuaGCGUUG-------------UCA-GGG- -5'
14000 5' -53.5 NC_003521.1 + 1316 0.66 0.989774
Target:  5'- gGC-GCCgGCGACGuggCGCGGCuguaucGGUCCa -3'
miRNA:   3'- -CGuCGG-CGCUGUua-GCGUUG------UCAGGg -5'
14000 5' -53.5 NC_003521.1 + 1441 0.66 0.992094
Target:  5'- -gGGCCGCGAgcugcgccgcCGGUgGCAGCAcacgggcaUCCCg -3'
miRNA:   3'- cgUCGGCGCU----------GUUAgCGUUGUc-------AGGG- -5'
14000 5' -53.5 NC_003521.1 + 1787 0.68 0.972232
Target:  5'- gGC-GCCGCGACcaGGUC-CGGgGGUCCg -3'
miRNA:   3'- -CGuCGGCGCUG--UUAGcGUUgUCAGGg -5'
14000 5' -53.5 NC_003521.1 + 2165 0.7 0.92439
Target:  5'- aGCAGCaacuGCaACAGUUGCAGCAaccgCCCg -3'
miRNA:   3'- -CGUCGg---CGcUGUUAGCGUUGUca--GGG- -5'
14000 5' -53.5 NC_003521.1 + 3183 0.7 0.918941
Target:  5'- cGCugcGUgGCGACAAggGCAACAGcaaCCCg -3'
miRNA:   3'- -CGu--CGgCGCUGUUagCGUUGUCa--GGG- -5'
14000 5' -53.5 NC_003521.1 + 3798 0.74 0.738267
Target:  5'- aGCA-CCGCGAUccagcacgcuGAUCGCAAcCAGUCUCu -3'
miRNA:   3'- -CGUcGGCGCUG----------UUAGCGUU-GUCAGGG- -5'
14000 5' -53.5 NC_003521.1 + 4352 0.69 0.948186
Target:  5'- --cGCCGcCGGCGguucgcucAUCGCGGCccgcGUCCCg -3'
miRNA:   3'- cguCGGC-GCUGU--------UAGCGUUGu---CAGGG- -5'
14000 5' -53.5 NC_003521.1 + 4464 0.71 0.907355
Target:  5'- uGCGGCUgacggucuggGCGGCGAUCcaGCAgaGCAGaCCCa -3'
miRNA:   3'- -CGUCGG----------CGCUGUUAG--CGU--UGUCaGGG- -5'
14000 5' -53.5 NC_003521.1 + 4678 0.74 0.747805
Target:  5'- --cGCCgGCGAC-GUCGCG-CGGUCCCc -3'
miRNA:   3'- cguCGG-CGCUGuUAGCGUuGUCAGGG- -5'
14000 5' -53.5 NC_003521.1 + 5296 0.67 0.983566
Target:  5'- gGUAaCgGCGACAgugGUCGUAACGGUCg- -3'
miRNA:   3'- -CGUcGgCGCUGU---UAGCGUUGUCAGgg -5'
14000 5' -53.5 NC_003521.1 + 5333 0.72 0.852209
Target:  5'- cCGGCCGCGACuccgGCGAUAGUgguaagCCCg -3'
miRNA:   3'- cGUCGGCGCUGuuagCGUUGUCA------GGG- -5'
14000 5' -53.5 NC_003521.1 + 5523 0.66 0.988429
Target:  5'- aGCAGCaGCGACGGUgaCGGCAG-CCg -3'
miRNA:   3'- -CGUCGgCGCUGUUAgcGUUGUCaGGg -5'
14000 5' -53.5 NC_003521.1 + 5550 0.68 0.974856
Target:  5'- cGCGGCCGCcGCcAUCGUu---GUUCCg -3'
miRNA:   3'- -CGUCGGCGcUGuUAGCGuuguCAGGG- -5'
14000 5' -53.5 NC_003521.1 + 6629 0.67 0.985164
Target:  5'- -aGGCCGCGcGCGAacgcuuggcccgcUUGCGACGuugccagaacauGUCCCg -3'
miRNA:   3'- cgUCGGCGC-UGUU-------------AGCGUUGU------------CAGGG- -5'
14000 5' -53.5 NC_003521.1 + 6742 0.67 0.979554
Target:  5'- cGCAGCCaGCG-C--UCGCcg-AGUCCCa -3'
miRNA:   3'- -CGUCGG-CGCuGuuAGCGuugUCAGGG- -5'
14000 5' -53.5 NC_003521.1 + 7654 0.73 0.793854
Target:  5'- gGCGGCCGCcacGGCGG-CGCGgacaGCGGUgCCCa -3'
miRNA:   3'- -CGUCGGCG---CUGUUaGCGU----UGUCA-GGG- -5'
14000 5' -53.5 NC_003521.1 + 7738 0.78 0.539839
Target:  5'- gGCGGCgcgaGCGGCGGagGCGgcgGCAGUCCCa -3'
miRNA:   3'- -CGUCGg---CGCUGUUagCGU---UGUCAGGG- -5'
14000 5' -53.5 NC_003521.1 + 7972 0.68 0.966403
Target:  5'- cGCGGCCGgGAgGGUCcGCGGCGG-Cg- -3'
miRNA:   3'- -CGUCGGCgCUgUUAG-CGUUGUCaGgg -5'
14000 5' -53.5 NC_003521.1 + 8067 0.66 0.992094
Target:  5'- cGCAGaCCGUagaaauacacucGAUaggGAUCGCAGCGG-CUCg -3'
miRNA:   3'- -CGUC-GGCG------------CUG---UUAGCGUUGUCaGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.