miRNA display CGI


Results 1 - 20 of 457 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14000 5' -53.5 NC_003521.1 + 191677 1.14 0.004433
Target:  5'- aGCAGCCGCGACAAUCGCAACAGUCCCc -3'
miRNA:   3'- -CGUCGGCGCUGUUAGCGUUGUCAGGG- -5'
14000 5' -53.5 NC_003521.1 + 161142 0.85 0.251372
Target:  5'- cGCGGCCGCgGGCGGucgcggacgucguUCGCAACAGUCgCCg -3'
miRNA:   3'- -CGUCGGCG-CUGUU-------------AGCGUUGUCAG-GG- -5'
14000 5' -53.5 NC_003521.1 + 218717 0.82 0.353475
Target:  5'- gGCGGCgGCGGCGggcgagaagcggcGUCGgGACGGUCCCc -3'
miRNA:   3'- -CGUCGgCGCUGU-------------UAGCgUUGUCAGGG- -5'
14000 5' -53.5 NC_003521.1 + 75809 0.81 0.402636
Target:  5'- -aAGCCGCGGCGAUCGCGGCc-UCCUc -3'
miRNA:   3'- cgUCGGCGCUGUUAGCGUUGucAGGG- -5'
14000 5' -53.5 NC_003521.1 + 60783 0.81 0.419672
Target:  5'- gGCAuGCUGCGGCuuUC-CGACGGUCCCg -3'
miRNA:   3'- -CGU-CGGCGCUGuuAGcGUUGUCAGGG- -5'
14000 5' -53.5 NC_003521.1 + 98476 0.81 0.419672
Target:  5'- gGCGGCCGCGGCGgccGUgGCGGCGGcCUCg -3'
miRNA:   3'- -CGUCGGCGCUGU---UAgCGUUGUCaGGG- -5'
14000 5' -53.5 NC_003521.1 + 197637 0.81 0.419672
Target:  5'- -aGGCCGCGAacguGUUGCGGCAcGUCCCa -3'
miRNA:   3'- cgUCGGCGCUgu--UAGCGUUGU-CAGGG- -5'
14000 5' -53.5 NC_003521.1 + 60747 0.79 0.520451
Target:  5'- aCGGCgGCGGCAGUCGCcGCGGgagaaUCCCc -3'
miRNA:   3'- cGUCGgCGCUGUUAGCGuUGUC-----AGGG- -5'
14000 5' -53.5 NC_003521.1 + 183916 0.79 0.520451
Target:  5'- cGguGCUGCGGCGcuGUCGCGACGG-CCa -3'
miRNA:   3'- -CguCGGCGCUGU--UAGCGUUGUCaGGg -5'
14000 5' -53.5 NC_003521.1 + 183128 0.78 0.538864
Target:  5'- cCGGuuGCGGCGGUCGCAuccccguGCAGaCCCa -3'
miRNA:   3'- cGUCggCGCUGUUAGCGU-------UGUCaGGG- -5'
14000 5' -53.5 NC_003521.1 + 7738 0.78 0.539839
Target:  5'- gGCGGCgcgaGCGGCGGagGCGgcgGCAGUCCCa -3'
miRNA:   3'- -CGUCGg---CGCUGUUagCGU---UGUCAGGG- -5'
14000 5' -53.5 NC_003521.1 + 94405 0.78 0.559465
Target:  5'- cGUAGCCGCG-CAGguugaCGCGGCGG-CCCa -3'
miRNA:   3'- -CGUCGGCGCuGUUa----GCGUUGUCaGGG- -5'
14000 5' -53.5 NC_003521.1 + 213814 0.77 0.579286
Target:  5'- cGCAGCCacaucacgguGCGGugUAGUCGCAGCAGUucggCCCa -3'
miRNA:   3'- -CGUCGG----------CGCU--GUUAGCGUUGUCA----GGG- -5'
14000 5' -53.5 NC_003521.1 + 17356 0.77 0.589254
Target:  5'- -gGGCCGUGACGccggCGCGGCGG-CCCa -3'
miRNA:   3'- cgUCGGCGCUGUua--GCGUUGUCaGGG- -5'
14000 5' -53.5 NC_003521.1 + 145598 0.77 0.599252
Target:  5'- gGCGGCCGUGGCc-UCGCugcuGCAGUCgCa -3'
miRNA:   3'- -CGUCGGCGCUGuuAGCGu---UGUCAGgG- -5'
14000 5' -53.5 NC_003521.1 + 209561 0.77 0.599252
Target:  5'- gGUGGCgGCGACGGUgGCGGgGGUCCg -3'
miRNA:   3'- -CGUCGgCGCUGUUAgCGUUgUCAGGg -5'
14000 5' -53.5 NC_003521.1 + 203729 0.77 0.619311
Target:  5'- aGCAGCCgggGCGACAcuGUCGC-ACGGUUCg -3'
miRNA:   3'- -CGUCGG---CGCUGU--UAGCGuUGUCAGGg -5'
14000 5' -53.5 NC_003521.1 + 53506 0.77 0.629358
Target:  5'- cGCuGCUGCGGC-GUCGCAGCGG-CCg -3'
miRNA:   3'- -CGuCGGCGCUGuUAGCGUUGUCaGGg -5'
14000 5' -53.5 NC_003521.1 + 96715 0.77 0.629358
Target:  5'- -aGGCCGCGGCGGUC-CAGCAG-CCg -3'
miRNA:   3'- cgUCGGCGCUGUUAGcGUUGUCaGGg -5'
14000 5' -53.5 NC_003521.1 + 34086 0.76 0.649451
Target:  5'- gGCAGUCgGCGAUAucgCGCGAUAGgagCCCg -3'
miRNA:   3'- -CGUCGG-CGCUGUua-GCGUUGUCa--GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.