miRNA display CGI


Results 1 - 20 of 457 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14000 5' -53.5 NC_003521.1 + 74574 0.74 0.766579
Target:  5'- gGCGGCgacggaGCGGCGG-CGCGGC-GUCCCg -3'
miRNA:   3'- -CGUCGg-----CGCUGUUaGCGUUGuCAGGG- -5'
14000 5' -53.5 NC_003521.1 + 58788 0.75 0.699311
Target:  5'- cGCGcGCCgGCGACGA-CGCAuagACGGUCUCg -3'
miRNA:   3'- -CGU-CGG-CGCUGUUaGCGU---UGUCAGGG- -5'
14000 5' -53.5 NC_003521.1 + 116886 0.75 0.718932
Target:  5'- cGCGGCUGCGGCGG-CGCGccgGCGGgagaCCCc -3'
miRNA:   3'- -CGUCGGCGCUGUUaGCGU---UGUCa---GGG- -5'
14000 5' -53.5 NC_003521.1 + 232357 0.75 0.72864
Target:  5'- aGCAGUCGCGGCGGcacCGCGAagcggaGGUCCa -3'
miRNA:   3'- -CGUCGGCGCUGUUa--GCGUUg-----UCAGGg -5'
14000 5' -53.5 NC_003521.1 + 204045 0.75 0.72864
Target:  5'- cGCAGCgCGUGGCccugccAGUCGCcGCAGUCgCa -3'
miRNA:   3'- -CGUCG-GCGCUG------UUAGCGuUGUCAGgG- -5'
14000 5' -53.5 NC_003521.1 + 191272 0.74 0.738267
Target:  5'- gGCAGCCGCaGaACAGguugUGCAGCAuGUCUCu -3'
miRNA:   3'- -CGUCGGCG-C-UGUUa---GCGUUGU-CAGGG- -5'
14000 5' -53.5 NC_003521.1 + 58406 0.74 0.738267
Target:  5'- cGCGGCCGCGugA--UGCGGCGGUUg- -3'
miRNA:   3'- -CGUCGGCGCugUuaGCGUUGUCAGgg -5'
14000 5' -53.5 NC_003521.1 + 79697 0.74 0.738267
Target:  5'- cGCGGCCGCGuuGAUCcuGCAAU--UCCCg -3'
miRNA:   3'- -CGUCGGCGCugUUAG--CGUUGucAGGG- -5'
14000 5' -53.5 NC_003521.1 + 4678 0.74 0.747805
Target:  5'- --cGCCgGCGAC-GUCGCG-CGGUCCCc -3'
miRNA:   3'- cguCGG-CGCUGuUAGCGUuGUCAGGG- -5'
14000 5' -53.5 NC_003521.1 + 47517 0.75 0.699311
Target:  5'- uGCAGCCGUaGCuga-GCAGCGuGUCCCg -3'
miRNA:   3'- -CGUCGGCGcUGuuagCGUUGU-CAGGG- -5'
14000 5' -53.5 NC_003521.1 + 117223 0.75 0.689414
Target:  5'- cGCAcCCGCuGACGGcCGCGGCGGcUCCCg -3'
miRNA:   3'- -CGUcGGCG-CUGUUaGCGUUGUC-AGGG- -5'
14000 5' -53.5 NC_003521.1 + 85654 0.76 0.669492
Target:  5'- gGCAGCCGCGGC---CGCcAGCuGUUCCg -3'
miRNA:   3'- -CGUCGGCGCUGuuaGCG-UUGuCAGGG- -5'
14000 5' -53.5 NC_003521.1 + 60783 0.81 0.419672
Target:  5'- gGCAuGCUGCGGCuuUC-CGACGGUCCCg -3'
miRNA:   3'- -CGU-CGGCGCUGuuAGcGUUGUCAGGG- -5'
14000 5' -53.5 NC_003521.1 + 197637 0.81 0.419672
Target:  5'- -aGGCCGCGAacguGUUGCGGCAcGUCCCa -3'
miRNA:   3'- cgUCGGCGCUgu--UAGCGUUGU-CAGGG- -5'
14000 5' -53.5 NC_003521.1 + 213814 0.77 0.579286
Target:  5'- cGCAGCCacaucacgguGCGGugUAGUCGCAGCAGUucggCCCa -3'
miRNA:   3'- -CGUCGG----------CGCU--GUUAGCGUUGUCA----GGG- -5'
14000 5' -53.5 NC_003521.1 + 209561 0.77 0.599252
Target:  5'- gGUGGCgGCGACGGUgGCGGgGGUCCg -3'
miRNA:   3'- -CGUCGgCGCUGUUAgCGUUgUCAGGg -5'
14000 5' -53.5 NC_003521.1 + 145598 0.77 0.599252
Target:  5'- gGCGGCCGUGGCc-UCGCugcuGCAGUCgCa -3'
miRNA:   3'- -CGUCGGCGCUGuuAGCGu---UGUCAGgG- -5'
14000 5' -53.5 NC_003521.1 + 203729 0.77 0.619311
Target:  5'- aGCAGCCgggGCGACAcuGUCGC-ACGGUUCg -3'
miRNA:   3'- -CGUCGG---CGCUGU--UAGCGuUGUCAGGg -5'
14000 5' -53.5 NC_003521.1 + 53506 0.77 0.629358
Target:  5'- cGCuGCUGCGGC-GUCGCAGCGG-CCg -3'
miRNA:   3'- -CGuCGGCGCUGuUAGCGUUGUCaGGg -5'
14000 5' -53.5 NC_003521.1 + 164451 0.76 0.659482
Target:  5'- cGCGGCCGCGGC---CGUcACGGUCgCCg -3'
miRNA:   3'- -CGUCGGCGCUGuuaGCGuUGUCAG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.