miRNA display CGI


Results 1 - 20 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14003 3' -56.3 NC_003521.1 + 137916 0.66 0.954568
Target:  5'- -gUACCcguGGCugGCGGgUcgCGGUUCCc -3'
miRNA:   3'- caGUGG---CUGugCGCCgAaaGCCGAGG- -5'
14003 3' -56.3 NC_003521.1 + 74176 0.66 0.964288
Target:  5'- --gGCCGACugcgcCGCGGCgcccggcgcgCGGC-CCg -3'
miRNA:   3'- cagUGGCUGu----GCGCCGaaa-------GCCGaGG- -5'
14003 3' -56.3 NC_003521.1 + 167396 0.66 0.9462
Target:  5'- -aCGCgGGCACGCuagugggGGCgcUUCGGCUgCu -3'
miRNA:   3'- caGUGgCUGUGCG-------CCGa-AAGCCGAgG- -5'
14003 3' -56.3 NC_003521.1 + 111294 0.66 0.964922
Target:  5'- -cCGCCGcgauggagaACugGuCGGCgcUCGaGCUCCu -3'
miRNA:   3'- caGUGGC---------UGugC-GCCGaaAGC-CGAGG- -5'
14003 3' -56.3 NC_003521.1 + 110652 0.66 0.950701
Target:  5'- -gCGCCGGCACGgucaCGGCccggUCGGC-Ca -3'
miRNA:   3'- caGUGGCUGUGC----GCCGaa--AGCCGaGg -5'
14003 3' -56.3 NC_003521.1 + 238841 0.66 0.956056
Target:  5'- uUCGCCGuaugcguuauuagagGCGCGcCGGCUgggugucccgCGGgUCCg -3'
miRNA:   3'- cAGUGGC---------------UGUGC-GCCGAaa--------GCCgAGG- -5'
14003 3' -56.3 NC_003521.1 + 70196 0.66 0.950701
Target:  5'- -aCACCGGCAgGuCGGg--UCGGC-CCu -3'
miRNA:   3'- caGUGGCUGUgC-GCCgaaAGCCGaGG- -5'
14003 3' -56.3 NC_003521.1 + 190041 0.66 0.960661
Target:  5'- cGUCGCCGAucgaccaggaccgcCGCGCGGUcUUCacguacguucuGGC-CCg -3'
miRNA:   3'- -CAGUGGCU--------------GUGCGCCGaAAG-----------CCGaGG- -5'
14003 3' -56.3 NC_003521.1 + 105796 0.66 0.961675
Target:  5'- -cCACCGugACGCaGGCca-CGGUgCCc -3'
miRNA:   3'- caGUGGCugUGCG-CCGaaaGCCGaGG- -5'
14003 3' -56.3 NC_003521.1 + 91653 0.66 0.954191
Target:  5'- --aGCCGGCGugccCGCGGCUcccuggcgcaUUCcgcagcgGGCUCCu -3'
miRNA:   3'- cagUGGCUGU----GCGCCGA----------AAG-------CCGAGG- -5'
14003 3' -56.3 NC_003521.1 + 56330 0.66 0.94662
Target:  5'- -cCACCGAgGCGCGGCcgcgcagGGCgcacaCCa -3'
miRNA:   3'- caGUGGCUgUGCGCCGaaag---CCGa----GG- -5'
14003 3' -56.3 NC_003521.1 + 200281 0.66 0.950701
Target:  5'- aGUCACgGAaccgguuucCGCgGCGGCgugCGGCgggCCg -3'
miRNA:   3'- -CAGUGgCU---------GUG-CGCCGaaaGCCGa--GG- -5'
14003 3' -56.3 NC_003521.1 + 74761 0.66 0.960661
Target:  5'- cGUCGCCGuCgACGUGGCUggaguaugacgacggCGGCagCg -3'
miRNA:   3'- -CAGUGGCuG-UGCGCCGAaa-------------GCCGagG- -5'
14003 3' -56.3 NC_003521.1 + 196234 0.66 0.958225
Target:  5'- --gGCUGACuuggcgccugGCGCGGUUUcugUGGUUCCg -3'
miRNA:   3'- cagUGGCUG----------UGCGCCGAAa--GCCGAGG- -5'
14003 3' -56.3 NC_003521.1 + 146511 0.66 0.958225
Target:  5'- --gGCCGACcCGCaGaaacggCGGCUCCa -3'
miRNA:   3'- cagUGGCUGuGCGcCgaaa--GCCGAGG- -5'
14003 3' -56.3 NC_003521.1 + 200061 0.66 0.950701
Target:  5'- cUCACCGGCugGCuuaccgccGGCU--UGGCcucgCCa -3'
miRNA:   3'- cAGUGGCUGugCG--------CCGAaaGCCGa---GG- -5'
14003 3' -56.3 NC_003521.1 + 148623 0.66 0.961675
Target:  5'- cGUCGCgCGGcCGgGCGGCgaaaaaCGGCcCCg -3'
miRNA:   3'- -CAGUG-GCU-GUgCGCCGaaa---GCCGaGG- -5'
14003 3' -56.3 NC_003521.1 + 32359 0.66 0.95715
Target:  5'- --aGCCGGCgggACGgGGCUUUUGGUggcgcguggccaggUCCu -3'
miRNA:   3'- cagUGGCUG---UGCgCCGAAAGCCG--------------AGG- -5'
14003 3' -56.3 NC_003521.1 + 234785 0.66 0.950701
Target:  5'- -cCGCUGGgGCaCGGCUUacucgUCGGgCUCCu -3'
miRNA:   3'- caGUGGCUgUGcGCCGAA-----AGCC-GAGG- -5'
14003 3' -56.3 NC_003521.1 + 43232 0.66 0.961675
Target:  5'- -aCGCCGcACAUGUGGg---CGcGCUCCa -3'
miRNA:   3'- caGUGGC-UGUGCGCCgaaaGC-CGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.